Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq86798 219 1e-54 seq104604 203 8e-50 seq75365 170 5e-40 seq4131 161 2e-37 seq86800 132 1e-28 seq44288 132 1e-28 seq8808 131 4e-28 seq94566 111 4e-22 seq97179 98.7 3e-18 seq102405 87.8 5e-15 >seq86798 Length=704 Score = 219 bits (242), Expect = 1e-54 Identities = 205/257 (80%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 172 TTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATA 231 ||||| | ||||||| | |||||||||||||| |||||||||||||||||||||||||| Sbjct 704 TTCGCTTGCGCTAACCACTTCAATTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATA 645 Query 232 CGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTA 291 | || ||| || || |||||||||||||||||| ||||||||||||||| |||| || Sbjct 644 CTTCATCTTACGATTTCGCAGAGTGCTGTGTTTTTGATAAACAGTCGCAGCCACCTGATA 585 Query 292 TCTTCGACCGGCATGAGCTTACGGAGCAAGT-CCTTCAC-CCTCACCGGCGCACCTTCTC 349 | | ||| | ||| ||||||||| ||||||| || ||| |||||||| Sbjct 584 ATTGCAACCCATCTCTGCTCCAGGAGCAAGTCCCTTCACATAACATGGGCACACCTTCTT 525 Query 350 CCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGT 409 || ||||||||||| ||||||||||||||||| || ||||| |||| | ||||| || Sbjct 524 CCAAAGTTACGGTGTTATTTTGCCTAGTTCCTTCACCAGAGTTGTCTC-ATAGCCTTAGT 466 Query 410 ATTCTCTACCCAACCAC 426 |||||||||| | |||| Sbjct 465 ATTCTCTACCTACCCAC 449 >seq104604 Length=400 Score = 203 bits (224), Expect = 8e-50 Identities = 144/164 (88%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 264 TTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTC 323 ||||||||||||||||||||||||||| ||||| | | || ||||||||||||||||| Sbjct 400 TTTAATAAACAGTCGCAGCGGCCTGGTCACTTCGGCTGTCAACAGCTTACGGAGCAAGTC 341 Query 324 CT-TCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTT 382 | ||||| | | | |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 340 CGATCACCGTTAACAGCGCACCTTCTCCCGAAGTTACGGTGCCATTTTGCCTAGTTCCTT 281 Query 383 CCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | || ||||| ||||||||||||| |||||||||||| ||||| Sbjct 280 CACCAGAGTTGTCTCAAGCGCCTTAGTATTCTCTACCTGACCAC 237 >seq75365 Length=1304 Score = 170 bits (188), Expect = 5e-40 Identities = 163/205 (80%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 224 ACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCG 283 ||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 1304 ACCGTATACGTCCACTTTCGTGTTTGCACAGTGCTATGTTTTTAATAAACAGTCGCAGCC 1245 Query 284 GCCTGGTATCTTCGACCGGCATGAGCTTACGGA-GC-AAGTCCTTCACCCTCACCGGCGC 341 || | | | | ||| |||| | |||| || |||||||||||||| ||| Sbjct 1244 ACCAATTTTTTGCAACCTC--TGAGGCTCCGGACGCGAAGTCCTTCACCCTAGTAGGCAT 1187 Query 342 ACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGC 401 ||||||||||||||||||||| | ||||||| ||||||||| || | |||||||||||| Sbjct 1186 ACCTTCTCCCGAAGTTACGGTATCATTTTGCCGAGTTCCTTCACCTGGGTTCTCTCAAGC 1127 Query 402 GCCTTGGTATTCTCTACCCAACCAC 426 |||| | ||||| | || |||| Sbjct 1126 ACCTTAGGCTTCTCGCCTCACCCAC 1102 >seq4131 Length=338 Score = 161 bits (178), Expect = 2e-37 Identities = 169/225 (75%), Gaps = 14/225 (6%) Strand=Plus/Minus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 |||||||||||||||||||||||||||| |||||||||||| ||| || || |||||| Sbjct 327 TTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGCGACTTCGCAGAG 268 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACG 314 |||||||||| ||||||||||| | |||||| | | | || || ||||| || Sbjct 267 CCCTGTGTTTTTGTTAAACAGTCGCCACCCCCTGGTCTGTGCCCCCCACACCAGCTTGCG 208 Query 315 GAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCT 374 || | || || | ||||||| |||| |||||| | ||||||| Sbjct 207 TAGAA--------------ACTGGGCCTCCTTCTCGCGAACTTACGGAGGTATTTTGCCG 162 Query 375 AGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||||||||| | ||||||||||||||||||||||||||||||| Sbjct 161 AGTTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 117 >seq86800 Length=704 Score = 132 bits (146), Expect = 1e-28 Identities = 169/228 (74%), Gaps = 20/228 (9%) Strand=Plus/Plus Query 51 TGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 110 ||||||||| || ||||||| |||||| |||||| || | ||| || ||| ||| Sbjct 495 TGGAGACAGTAGGGCAGTCGTTACACCATTCATGCAGGACGACAATTAATCGCCAATGAA 554 Query 111 TTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAG 170 |||||||||||||||||||| | | ||| |||||||||||| |||| || || ||| Sbjct 555 TTTCGCTACCTTAGGACCGTCAGGGATACAGCCGCCGTTTACTGGGGTTT--ATAAAG-- 610 Query 171 CTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTAT 230 || |||| || ||| || ||||| | |||| ||||||| |||| || |||| Sbjct 611 --TC---TTAG---ACTACAT---TTCACCTTACAGCACTGGGCAGGTGTCAGACTCTAT 659 Query 231 ACGTCCAC--TTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGT 276 ||||| ||| || ||||||| |||||||||||||||||||| Sbjct 660 ---TCCACATTTTAAATTTAGCAGAGTCCTGTGTTTTTAATAAACAGT 704 >seq44288 Length=222 Score = 132 bits (146), Expect = 1e-28 Identities = 162/218 (74%), Gaps = 16/218 (7%) Strand=Plus/Plus Query 203 CCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGT 262 || ||||||||||||||||| |||||||||||| ||| || || |||||| |||||| Sbjct 1 CCAGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTACGGCTTCGCAGAGCCCTGTGT 60 Query 263 TTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGT 322 |||| |||||||||||| | |||||| | | | ||| ||| ||| || | || Sbjct 61 TTTTGATAAACAGTCGCTACCCCCTGGTCTGTGCCACCCTCATCTACTTGCGTA--AA-- 116 Query 323 CCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG-GTGCCTTTTTGCCTAGTTCCT 381 | | |||| ||||| ||||||||||| ||| | |||||| ||||||| Sbjct 117 ---TAAGGGTCAC-------GCTTCTTCCGAAGTTACGCGTG-CAATTTGCCGAGTTCCT 165 Query 382 TCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 || | ||||||||||||||||||||||| ||||||| Sbjct 166 TCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACC 203 >seq8808 Length=320 Score = 131 bits (144), Expect = 4e-28 Identities = 157/215 (73%), Gaps = 14/215 (7%) Strand=Plus/Plus Query 205 GGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTT 264 |||||||||||||||||| |||||||||||| ||| || || |||||| || ||||| Sbjct 3 GGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTACGACTTCGCAGAGCCCTATGTTT 62 Query 265 TTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCC 324 ||| ||||||||||| | |||||| | | | || | || |||| | Sbjct 63 TTAGTAAACAGTCGCCACCCCCTGGTTTGT--GCCC------------CCGACCAAGACT 108 Query 325 TTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCC 384 | | ||| | ||| | ||||||| |||| |||||| | ||||||| |||||||| Sbjct 109 TGCGTCCTAATCGGGCCTCCTTCTCGCGAACTTACGGAGGTATTTTGCCGAGTTCCTTAA 168 Query 385 CCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||||||||||||||||||||||||||||| Sbjct 169 ATGTGGTTCTCTCAAGCGCCTTGGTATTCTCTACC 203 >seq94566 Length=520 Score = 111 bits (122), Expect = 4e-22 Identities = 159/227 (70%), Gaps = 24/227 (11%) Strand=Plus/Plus Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 || |||||||||| |||||||||||| |||| || |||||||| |||||||| |||||| Sbjct 21 CACTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCTTATACGTCAACTTTCGTTTTTGCA 80 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTT 311 || ||||||||| |||||||||||| ||||| | || || || ||| ||| Sbjct 81 AAGCCATGTGTTTTTGATAAACAGTCGCCTGGGCCTATTTACTGCGGCCAACAT-TGCT- 138 Query 312 ACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTG 371 || |||| ||||||||||||||||| || ||||| Sbjct 139 ---------GT-------------TGGCGTCTCTTCTCCCGAAGTTACGAGACCATTTTG 176 Query 372 CCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||||||| || || ||| ||| |||| ||||||||||| Sbjct 177 CCTAGTTCCTTAGCCATGAATCACTCGAGCACCTTAGTATTCTCTAC 223 >seq97179 Length=480 Score = 98.7 bits (108), Expect = 3e-18 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 ||| ||||||||||||||||||||||| ||||||| ||||||||| | ||||||||| Sbjct 62 GGCACACCTTCTCCCGAAGTTACGGTGTTATTTTGCCGAGTTCCTTCTCTAGAGTTCTCT 121 Query 397 CAAGCGCCTTGGTATTCTC 415 |||||||||| | |||||| Sbjct 122 CAAGCGCCTTAGAATTCTC 140 >seq102405 Length=420 Score = 87.8 bits (96), Expect = 5e-15 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || | |||||||||||| | | ||||| ||| ||||||| | | |||||||| Sbjct 88 CGCGGGTAGATTGCATCTTCACAACCACTTCAACTTCGCTGAGTCCCTAGAGGAGACAGT 29 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGG 88 | |||||||||||||||||||||| || Sbjct 28 GTGGCCATCGTTACGCCATTCGTGCGGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1259423811584