Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq94566 140 7e-31 seq4131 136 8e-30 seq44288 111 3e-22 seq86800 109 1e-21 seq86798 107 4e-21 seq8808 102 2e-19 >seq94566 Length=520 Score = 140 bits (154), Expect = 7e-31 Identities = 139/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 177 TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGC 236 ||||| ||| |||||||||||||||||||||||| ||||| | ||||| || ||| | Sbjct 12 TAACATCTCCACTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCTTATACGTCAACTTTC 71 Query 237 GACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTG 296 | || ||| | | |||||||||| ||||||||||| |||||||||| |||||||| Sbjct 72 GTTTTTGCAAAGCCATGTGTTTTTGATAAACAGTCGCCTGGGCCTATTTACTGCGGCC-A 130 Query 297 TCATAG--ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 ||| | ||| | |||||||| |||||||| | ||||||||| ||||||||| Sbjct 131 ACATTGCTGTTGGCGTCTCTTCTCCCGAAGTTACGAGACCATTTTGCCTAGTTCCTTA 188 >seq4131 Length=338 Score = 136 bits (150), Expect = 8e-30 Identities = 142/187 (76%), Gaps = 11/187 (6%) Strand=Plus/Minus Query 189 TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAA 248 |||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||| Sbjct 327 TTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGCGACTTCGCAGAG 268 Query 249 ACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC---------CTGTCA 299 |||||||||||| ||||||||||| ||| ||| ||| | || | Sbjct 267 CCCTGTGTTTTTGTTAAACAGTCGCCACCCCCTGGTCTGTGCCCCCCACACCAGCTTGCG 208 Query 300 TAG--ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAAT 357 ||| || || | ||||||| | || |||||| | ||||||||||||||||| | || Sbjct 207 TAGAAACTGGGCCTCCTTCTCGCGAACTTACGGAGGTATTTTGCCGAGTTCCTTCAACAT 148 Query 358 AGTTCTC 364 ||||||| Sbjct 147 AGTTCTC 141 >seq44288 Length=222 Score = 111 bits (122), Expect = 3e-22 Identities = 133/180 (74%), Gaps = 13/180 (7%) Strand=Plus/Plus Query 197 CCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGT 256 ||||||||||||||||||||| ||||||| ||| ||| || ||| ||||| ||||||| Sbjct 1 CCAGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTACGGCTTCGCAGAGCCCTGTGT 60 Query 257 TTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGAC-----------A 305 ||||| |||||||||||| ||| ||| ||| || |||| || | Sbjct 61 TTTTGATAAACAGTCGCTACCCCCTGGTCTGTGCCACC-CTCATCTACTTGCGTAAATAA 119 Query 306 GGCAC-CCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 || | | ||||| || |||||||| | || ||||||||||||||| | ||||||||| Sbjct 120 GGGTCACGCTTCTTCCGAAGTTACGCGTGCAATTTGCCGAGTTCCTTCAACATAGTTCTC 179 >seq86800 Length=704 Score = 109 bits (120), Expect = 1e-21 Identities = 186/266 (70%), Gaps = 18/266 (7%) Strand=Plus/Plus Query 6 GGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTG-AGACAGTGCCCAAATCG 64 ||||| |||||| | | | |||| |||| |||| ||| ||||||| | ||| Sbjct 456 GGCATTTTCACCTATAATTCGGTTTCGTCGAG-CTATATTTGGAGACAGTAGGGCAGTCG 514 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 |||| || ||| ||| || || | ||| || ||| ||||||||||||||||||||||| Sbjct 515 TTACACCATTCATGCAGGACGACAATTAATCGCCAATGAATTTCGCTACCTTAGGACCGT 574 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGAT 184 | | ||| ||||||||||||||||| ||| | | ||| || ||| Sbjct 575 CAGGGATACAGCCGCCGTTTACTGGGGTTTA---TAAAGTCTTAGA-----CTA------ 620 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 | || ||||| |||||| ||||||| ||||| |||| | | | || | ||||| Sbjct 621 -CATTTCACCTTACAGCACTGGGCAGGTGTCAGACTCTATTCCACAT-TTTAAATTTAGC 678 Query 245 AGAAACCTGTGTTTTTGGTAAACAGT 270 ||| ||||||||||| |||||||| Sbjct 679 AGAGTCCTGTGTTTTTAATAAACAGT 704 >seq86798 Length=704 Score = 107 bits (118), Expect = 4e-21 Identities = 158/226 (70%), Gaps = 27/226 (12%) Strand=Plus/Minus Query 166 TTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATA 225 |||| |||| ||||| | | |||||||||||||||||||||||||||| |||||| Sbjct 704 TTCGCTTGCGCTAACCACTTCAATTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATA 645 Query 226 CATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGC------------ 273 | || |||| ||| || ||||| ||||||||||| ||||||||||| Sbjct 644 CTTCATCTTACGATTTCGCAGAGTGCTGTGTTTTTGATAAACAGTCGCAGCCACCTGATA 585 Query 274 -TTGGGCCTATTCTCTGC-----------GGCCTGTCATA-GACA--GGCACCCCTTCTC 318 ||| | ||||||| | || ||| | ||| ||||| |||||| Sbjct 584 ATTGCAACCCATCTCTGCTCCAGGAGCAAGTCCCTTCACATAACATGGGCACACCTTCTT 525 Query 319 CCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 || ||||||||| || |||||||| |||||||| || | |||| || Sbjct 524 CCAAAGTTACGGTGTTATTTTGCCTAGTTCCTTCACCAGAGTTGTC 479 >seq8808 Length=320 Score = 102 bits (112), Expect = 2e-19 Identities = 128/177 (72%), Gaps = 13/177 (7%) Strand=Plus/Plus Query 200 GCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTT 259 |||||||||||||||||| ||||||| ||||||| |||||| ||||| ||| |||||| Sbjct 4 GCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTACGACTTCGCAGAGCCCTATGTTTT 63 Query 260 TGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC------------TGTCATAGACAGG 307 | |||||||||||| ||| | | ||| || ||| || | || Sbjct 64 TAGTAAACAGTCGCCACCCCCTGGTTTGTGCCCCCGACCAAGACTTGCGTCCTAATCGGG 123 Query 308 CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 | | ||||||| | || |||||| | ||||||||||||||||||| | |||||| Sbjct 124 C-CTCCTTCTCGCGAACTTACGGAGGTATTTTGCCGAGTTCCTTAAATGTGGTTCTC 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061240369152