Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq16487 242 1e-61 seq20538 221 4e-55 seq6190 203 1e-49 >seq16487 Length=290 Score = 242 bits (268), Expect = 1e-61 Identities = 210/257 (82%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 100 CTTGACATCCTC-TGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACA 158 |||||||| ||| | | ||| |||||| ||| |||| || | |||| ||| ||| Sbjct 286 CTTGACATACTCGTCGTCGCTCCAGAGATGGAGCTTTCAGCTAGGCTGGAC-GAGATACA 228 Query 159 GGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAG 218 |||| ||||||| ||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 227 GGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTCGGTTAAGTCCGGCAACGAG 168 Query 219 CGCAACCCTTAAGCTTAGTTGCCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGT 276 |||||||| ||||||||||| || ||||| ||||||||||| | |||||| || Sbjct 167 CGCAACCCACGTCCTTAGTTGCCAGCAGGTTAAGCTGGGCACTCTAGGGAAACTGCCCGT 108 Query 277 GACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTA 336 || || | ||||||||||| ||| |||||||| || ||||| |||||| | |||||||| Sbjct 107 GATAAGCGGGAGGAAGGTGTGGATGACGTCAAGTCCTCATGGCCCTTACGGGTTGGGCTA 48 Query 337 CACACGTGCTACAATGG 353 ||||||||||||||||| Sbjct 47 CACACGTGCTACAATGG 31 >seq20538 Length=277 Score = 221 bits (244), Expect = 4e-55 Identities = 217/278 (78%), Gaps = 9/278 (3%) Strand=Plus/Plus Query 200 GGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACT 259 |||||||||| |||||||||||||||| | |||||||||||||||||||||| ||| Sbjct 1 GGTTAAGTCCAGCAACGAGCGCAACCCCTGTCACTAGTTGCCATCATTAAGTTGGGGACT 60 Query 260 CTAAGTTGAC----TGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCA 315 ||| ||| | | ||| | | ||||||||||||||||||||| ||| | Sbjct 61 CTAGTGAGACAAACTCTCTTTGAGA----GTGGGAAGGTGGGGACGACGTCAAGTCAGTA 116 Query 316 TGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAAC 375 || |||||| | | ||||| |||||||||||||||| || |||| |||| ||| | || Sbjct 117 TGGCCCTTACGTCTAGGGCTGCACACGTGCTACAATGCCCAGTACAGAGGGAAGCAATAC 176 Query 376 CGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGA 435 |||||||| ||| ||| || ||||| || | |||||| ||||| |||||||||||||| Sbjct 177 CGCGAGGTGGAGCCAAT-CCTTAAAGCTGGGCCCAGTTCAGATTGGAGTCTGCAACTCGA 235 Query 436 CTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC 473 || |||||| |||||||||||||||| | |||||| Sbjct 236 CTCCATGAAGTTGGAATCGCTAGTAATGGCGCATCAGC 273 >seq6190 Length=332 Score = 203 bits (224), Expect = 1e-49 Identities = 210/274 (77%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| ||||||||||||||| |||| ||| |||||||||||| ||| Sbjct 276 ACAGGTGCTGCATGGCTGTCGTCAGCTCGTGCTGTGAAGTGTCGGGTTAAGTCCCTTAAC 217 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCC 273 ||||||||||| || |||||| | | | | | | | | |||||| ||||||| Sbjct 216 GAGCGCAACCCCTATCGTTAGTTACTAACGCGTCATGGCGAGGACTCTAGCGAGACTGCC 157 Query 274 GGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGG 333 |||| ||||||||||||||||||||| |||||||| || ||||| |||||||| | ||| Sbjct 156 GGTGTCAAACCGGAGGAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTATGTCTAGGG 97 Query 334 CTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATC 393 | || |||||||||||||| |||||| | || | |||||||||| |||||||| Sbjct 96 ATGCAAACGTGCTACAATGGTATGGACAAAGCGATGCAATACCGCGAGGTGGAGCAAATC 37 Query 394 CCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTG 427 || ||| | |||||||||| | || ||| Sbjct 36 GCAAAAACCATGCCCCAGTTCGGATAGCAGGCTG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1502358353920