Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq102405 118 2e-24 seq10948 118 2e-24 seq10715 109 1e-21 seq17965 93.3 8e-17 seq497 93.3 8e-17 seq101888 89.7 1e-15 seq7301 89.7 1e-15 >seq102405 Length=420 Score = 118 bits (130), Expect = 2e-24 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||| |||| | |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 262 GGGACCGTGTATGGTGGGCAGTTTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGA 321 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | | ||| || ||| | || ||||| | | | | ||||||| |||| |||| || Sbjct 322 GTGCGAAGGTAACCTAGGTACGGTCGGAAATCGTACTGATAGTGCAATGGCATAAGGTTG 381 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAG 268 |||||||||| || || ||| |||||| |||||| Sbjct 382 CTTGACTGCGAGACGGACAGGTCGAGCAGGTGCGAAAG 419 >seq10948 Length=311 Score = 118 bits (130), Expect = 2e-24 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| ||| | ||| ||||||||||||| |||||||||| |||||||||||||||| Sbjct 140 GGGACATTGTGTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGC 81 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 || |||| |||||||| | | ||| || | || | | |||| || |||| ||||||| Sbjct 80 TCCTAAAGGTACCCTCAACACGTTTGGTAATCGTGTGTAGAGTGTAATGGCATAAGGGTG 21 Query 231 TTTGACTGCGACACC 245 ||||||| || ||| Sbjct 20 CTTGACTGAGAGACC 6 >seq10715 Length=311 Score = 109 bits (120), Expect = 1e-21 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 |||||||| | ||| ||||||||||||| |||||||||| |||||||||||||||| Sbjct 138 GGACAGTGCGTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCT 79 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | |||| | |||||| || ||| || | || ||| ||||||| |||| ||||| | Sbjct 78 TCTAAAGGTGCCCTCAATACGGTTGGCAATCGTGTGCAGAGTGCAATGGCACAAGGGCGC 19 Query 232 TTGACTGCGACAC 244 ||||||| || || Sbjct 18 TTGACTGAGAGAC 6 >seq17965 Length=285 Score = 93.3 bits (102), Expect = 8e-17 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| |||| | ||| |||||||||||||||||| ||||| ||||||||||||||| Sbjct 143 GGGACACTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGA 84 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 || | ||| | || || ||| ||| | ||| || ||||||| |||| ||| | Sbjct 83 GCACGAAGGTTGGCTAAGTATGGTCGGACATCATACGGTTAGTGCAATGGCATAAGCCAG 24 Query 231 TTTGACTGCGACAC 244 || ||||||| || Sbjct 23 CTTAACTGCGAGAC 10 >seq497 Length=364 Score = 93.3 bits (102), Expect = 8e-17 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 ||| |||||||||||||||||| ||||| ||||||||||||||| || | | | ||| || Sbjct 128 GGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCGCTATGGTACTCT 69 Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244 | || ||||| | | | |||| ||||||||||| ||| |||||||||| || Sbjct 68 AAATACGGTCGGAAATCGTATGGTTAGTGTAAAGGCAAAAGAGTGCTTGACTGCGAGAC 10 >seq101888 Length=425 Score = 89.7 bits (98), Expect = 1e-15 Identities = 117/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||||| || || |||||| ||||||||||| ||||| ||||||||||||||| Sbjct 164 GGGACAGTGTTAGCGGGTCAGTTTTACTGGGGCGGTATCCTCCTAAAGAGTAACGGAGGA 105 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAA--GGCAAAAGGG 228 | ||| | ||||| | ||| ||| || || | | || ||| | || | ||||| Sbjct 104 TTACGAAGGTTCCCTCGGTCTGGTTGGCAATCA-GACTATAGAGCATATTGGTATAAGGG 46 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAG 268 | || |||| || ||| |||||| ||||| |||||| Sbjct 45 AGCTTTACTGTGAGACCTACAAGTCGAGCAGTTGCGAAAG 6 >seq7301 Length=320 Score = 89.7 bits (98), Expect = 1e-15 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACC 89 |||| ||| || |||||| | ||| ||||| |||| || | || ||| ||||||| Sbjct 130 ACGCTAGTCTTGGTGGAGCCACCCTTGAGATACCACCCTAATTCTGTTTGATGTCTAACC 189 Query 90 GGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGC 149 | ||| || ||| |||||| ||| | |||| |||||||||||||||||||| Sbjct 190 GCGGTCCGT-TATCCGGATCCGGGACCCTGTGTGGCGGGTAGTTTGACTGGGGCGGTCGC 248 Query 150 CTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCA 209 |||| ||| ||||||||||||| | ||| | ||||| || ||||| | || Sbjct 249 CTCCTAAA-CGTAACGGAGGCGCGCGAAGGTTGGCTCAGAGCGGTCGGAAATCGCTCGTT 307 Query 210 CAGTGCAAAGGCA 222 ||||||| |||| Sbjct 308 GAGTGCAATGGCA 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981327690752