Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq92352 309 6e-82 seq95536 223 7e-56 seq33726 199 8e-49 seq7305 150 4e-34 seq85891 102 2e-19 seq46632 87.8 4e-15 >seq92352 Length=561 Score = 309 bits (342), Expect = 6e-82 Identities = 298/371 (80%), Gaps = 10/371 (3%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || | ||||||| |||||||||||||| |||||||||||| || | ||| Sbjct 78 CTTTACAACCCTAGAGCCTTCTT-CACACACGCGGCAT-GGCTGGATCAGGGTTGCCCCC 135 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 136 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAA 195 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||| | ||| || ||||| |||||||| ||| ||||| || Sbjct 196 TGTGGCTGATCATCCTCTCAAATCAGCTATAGATCGCAGCCTTGGTAGGCCTTTACCCCA 255 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||| |||||||| || |||||||||| || |||| | ||| || || || Sbjct 256 CCAACAAGCTAATCTAACGCAGGCTCATCT-AT-CCGCAGCAGCGCAAGCGCCACT--TT 311 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 | ||| || |||||||||||| ||| ||||||| |||| |||||||||| || Sbjct 312 TAATCCGAAGATATTATGCGGTATTAACGTTCGTTTCCAAACGGTATCCCCCACAGATAG 371 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCAAGAGA-AGCAAGCT-TCTCT 357 | ||||||||| || ||||||||||||||||| ||| ||| | | |||||||| | ||| Sbjct 372 GTAGATTCCTACGCGTTACTCACCCGTCCGCCACTCGTCAGCAAAGAGCAAGCTCTTTCT 431 Query 358 -CTACCGCTCG 367 ||||| ||| Sbjct 432 GTTACCGTTCG 442 >seq95536 Length=505 Score = 223 bits (246), Expect = 7e-56 Identities = 180/215 (84%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 123 TGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACC 182 || ||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| Sbjct 505 TGGCTGATCATCCTCTCAAACCAGCTAGAGATCGTCGCCTTGGTGAGCCATTACCTCACC 446 Query 183 AACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTC 242 |||||||||||| || | |||| ||| || ||| |||| |||||| |||||| |||| Sbjct 445 AACTAGCTAATCTCACTTGGGCTAATCAAATGGCGAAAGGTCCGAAGATCCCCTCCTTTG 386 Query 243 TCCCGTAGGACGT-ATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 |||||| |||| ||||||||||||| ||||||| | ||| |||||||| | ||| Sbjct 385 GTCCGTAG-ACGTTATGCGGTATTAGCAGTCGTTTCCAACTGTTGTCCCCCACCATAAGG 327 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || ||||| | |||||||||||||||||||||||| Sbjct 326 CATATTCCCAAGCATTACTCACCCGTCCGCCGCTC 292 >seq33726 Length=242 Score = 199 bits (220), Expect = 8e-49 Identities = 156/184 (85%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||| | |||||| ||||| | | | |||||||| ||| || |||||||||||||||| Sbjct 184 TTTACGACCCGAAGGCCTTCATCCCC-CACGCGGCGTTG-CTCCATCAGGCTTTCGCCCA 127 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| || |||| ||||||||| |||||||| ||||||||||||||| ||||||||| Sbjct 126 TTGTGAAAGATTCGAAACTGCTGCCACCCGTAGGTGTCTGGACCGTGTCTAAGTTCCAGT 67 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||||||||| ||| || | ||||||||||||| ||||||||| Sbjct 66 GTGGCTGATCATCCTCTCAGACCAGCTACCCGTCTTTGCCTTGGTGAGCCGTTACCTCAC 7 Query 182 CAAC 185 |||| Sbjct 6 CAAC 3 >seq7305 Length=327 Score = 150 bits (166), Expect = 4e-34 Identities = 108/122 (89%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||| | || ||| ||||| | ||| |||||||||| |||| |||||||||| ||||| Sbjct 208 CTTTACGACCCTAAGGCCTTCAT-CACTCACGCGGCAT-GGCTAGATCAGGCTTGCGCCC 265 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||| || |||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 266 ATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 325 Query 121 TG 122 || Sbjct 326 TG 327 >seq85891 Length=735 Score = 102 bits (112), Expect = 2e-19 Identities = 116/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 187 AGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGG---CCCGAAGGTCCCCTGCTTTCT 243 |||||||||||| |||||||||| | || || | |||| |||| |||| Sbjct 2 AGCTAATCCGACGCAGGCTCATCTAAATGCAAGAGCTTTCAAGAAGAGGCCCT-CTTTAC 60 Query 244 CCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCA 303 ||||| || |||||||||||||||| | |||| | |||||||||||| ||| | Sbjct 61 CCCGTGGGGCGTATGCGGTATTAGCATGAATTTCTCCATGTTATCCCCCACACTTAGGTA 120 Query 304 GATTCCTAGGCATTACTCACCCGTCCGCCGCTCT 337 |||||||| || ||||||||||||||||| |||| Sbjct 121 GATTCCTACGCGTTACTCACCCGTCCGCCACTCT 154 >seq46632 Length=218 Score = 87.8 bits (96), Expect = 4e-15 Identities = 146/212 (69%), Gaps = 17/212 (8%) Strand=Plus/Minus Query 126 CTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAAC 185 ||||||||||||||| ||||| || |||||| | |||||| ||||||||| ||||||| Sbjct 215 CTGATCATCCTCTCAAACCAGCTATAGATCGTAGACTTGGTAGGCCATTACCCCACCAAC 156 Query 186 TAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGA-AGGTCCCCTGCTTTCTC 244 || |||||| || ||| ||| ||||| | | ||||| | Sbjct 155 TATCTAATCTAACGCGGGCCAATC----------CTTCCCGATAAAT------CTTTCCC 112 Query 245 CCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAG 304 ||| ||| ||||| |||||||| || |||||| | | ||| || | | || | Sbjct 111 CCGAAGGGCGTATACGGTATTACTCTCAGTTTCCCGAGGCTATTCCGTAGAAAAGGGTAT 52 Query 305 ATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 |||| | || ||||| ||||||||||||||| Sbjct 51 GTTCCCACGCGTTACTAACCCGTCCGCCGCTC 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1070829890560