Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq17620 125 1e-26 seq53015 104 3e-20 seq38816 104 3e-20 >seq17620 Length=284 Score = 125 bits (138), Expect = 1e-26 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 58 CCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGG 117 || ||||| |||||||||||||||||||| ||||| ||||| ||||| || || || ||| Sbjct 26 CCTGGTGCTGGCGCTTCTTCCAGTACCTTTTGGTGGCGACGCTGCAGTGAACAGTCTCGG 85 Query 118 TCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGT 177 || |||| ||| | || | ||| || ||||||| || || || |||||||| || ||| Sbjct 86 TCACCCAAGTGAACAGCATTGCCTTGTCCGTCGGCCAAGACCTGAACTTCCACATGCCGT 145 Query 178 GGGTTGGTCAGGTACTTTTCCAGGTAGAC 206 ||||| |||| | ||||||| ||||| Sbjct 146 GGGTTTTCCAGGAATTTTTCCATATAGAC 174 >seq53015 Length=209 Score = 104 bits (114), Expect = 3e-20 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 58 CCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGG 117 ||||| ||||| |||||||| || || |||||||| ||||| ||||||||||| |||||| Sbjct 67 CCCGGCGCCGGGGCTTCTTCGAGCACTTTCTGGTGGCGACGCTGCAGCGAGCAGTCGCGG 126 Query 118 TCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGT 177 ||||| ||||| || || | |||||| || |||| | || || | || ||||| || Sbjct 127 TCGCCGAGGTGTATCGCATTGCCCTGTCCATCGGCGATCACCTGTATCTCAACGTGGCGA 186 Query 178 GG 179 || Sbjct 187 GG 188 >seq38816 Length=232 Score = 104 bits (114), Expect = 3e-20 Identities = 117/154 (76%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 ||| || || || |||||||||| || || || || ||||| || | ||||||||||| Sbjct 172 GCCTGGCGCAGGGGCTTCTTCCACCACTTTTTGATGGCGACGCTGTAAAGAGCAATCGCG 113 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 |||||||| |||||||| | ||| | || ||| |||||||| ||||| | ||||| Sbjct 112 TTCGCCCAGATGGATGGCATTGCCTTTTCCATCGCCTAGTACTTGAACTTCAATATGACG 53 Query 177 TGG-GTTGGTCAGGTACTTTTCCAGGTAGACCAT 209 || ||| | ||| | ||||||| ||||||||| Sbjct 52 CGGTGTTTCT-AGGAATTTTTCCATGTAGACCAT 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735221746240