Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq69987 313 6e-83 seq72356 300 4e-79 seq75365 259 1e-66 seq15380 251 2e-64 seq77926 230 6e-58 seq97778 223 9e-56 seq56836 199 1e-48 seq40912 188 2e-45 seq57391 154 4e-35 seq9294 138 3e-30 seq104094 111 4e-22 seq39530 93.3 1e-16 >seq69987 Length=1764 Score = 313 bits (346), Expect = 6e-83 Identities = 328/418 (78%), Gaps = 16/418 (4%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||| ||||| ||| | || ||||| | ||||||||||| ||||| | Sbjct 1686 CCTATCCACAAGTCATCCCGAGACATTG--CAACGTCTATGGGTTCGGTCCTTCAGTTGG 1629 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||||||||||| |||||||| ||| ||||||||| | ||||| |||||||| | | Sbjct 1628 T-GTTACCCAACCTT-CAACCTGCTCAT-GGATAGATCACTTGGTTT-CGGGTCTAATGC 1573 Query 124 CCAGCGA-CTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTA 181 | ||| || | ||||||| | ||||||||||| |||||||||| | ||||| | ||| Sbjct 1572 --AACGAACTTGGCGCCCTATTCAGACTCGCTTT-CGCTACGCCTACACCTATCGGCTTA 1516 Query 182 AGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAAC 241 ||||| || | | | ||||||| |||||||||||||||||||||||| ||||||| Sbjct 1515 AGCTT-GCTCGTTACATTAAGTCGTTGACCCATTATACAAAAGGTACGCCGTCACCCTT- 1458 Query 242 AAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 | ||||||| || | ||||| |||| | |||||||| ||||||||||||||| | Sbjct 1457 ---GCGGGCTCCGACAGTTTGTAGGCATCCAGTTTCAGGTACTATTTCACTCCCCTTGTC 1401 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 ||||| |||||| |||||||||||||||||| |||| |||||||||| || |||| || Sbjct 1400 GGGGTGCTTTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGGTCATGCACGAGTACTT 1341 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 || |||||||| ||||||||||| ||| ||| |||| |||| ||| ||||||| Sbjct 1340 AGGCTTGGAGGGTGGTCCCCCCACGTTCGAACAGGATTTCACGTGTCCCGCCCTACTC 1283 >seq72356 Length=1541 Score = 300 bits (332), Expect = 4e-79 Identities = 312/396 (79%), Gaps = 15/396 (4%) Strand=Plus/Plus Query 28 CTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGC 87 |||||||||| | || ||||||| |||||||| | ||||| ||||| || ||||| Sbjct 68 CTTTTTCAACAGACGTGGGTTCGGCCCTCCAGTGCAT-GTTACTGCACCTT-CAGCCTGC 125 Query 88 CCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGA-CTA-GACGCCCTAGTA 145 ||| || ||||||| | ||||| |||||||| | ||| ||| ||| ||||||||| || Sbjct 126 TCAT-GGCTAGATCGACTGGTTT-CGGGTCTAAT--CCAACGAACTAAGACGCCCTATTA 181 Query 146 AGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTC 204 ||||||| ||| | || ||| | | |||| | |||||||| | | ||| |||||| Sbjct 182 AGACTCGGTTTCC-CTGCGCATACACCTAACGGTTTAAGCTTGCTCGAT-AAATTAAGTC 239 Query 205 GCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTA 264 ||||||||||||||||||||||||| |||||| | ||||||||||| ||||| Sbjct 240 GCTGACCCATTATACAAAAGGTACGTGGTCACCATTTCA----GGCTCCCACTGTTTGTA 295 Query 265 CGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTC 324 |||| |||||||||| ||||||||||||||| |||||| |||||| |||||||||| Sbjct 296 GGCATTCGGTTTCAGGTACTATTTCACTCCCCTTGTCGGGGTGCTTTTCACCTTTCCCTC 355 Query 325 ACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCA 384 |||||||| |||||||||||||| | || |||| |||| |||||| | |||||| |||| Sbjct 356 ACGGTACTGGTTCACTATCGGTCGTTGAGGAGTACTTAGGCTTGGAAGGTGGTCCTCCCA 415 Query 385 TATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | |||| ||| |||| |||| |||||||||||| Sbjct 416 TGTTCAAACAGGATTTCACGTGTCCCGTCCTACTCG 451 >seq75365 Length=1304 Score = 259 bits (286), Expect = 1e-66 Identities = 224/261 (86%), Gaps = 14/261 (5%) Strand=Plus/Minus Query 3 TCCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTA 62 ||| |||||||| |||| || || | ||||||||| ||| |||||||||||||||| Sbjct 251 TCCTATCCACAGCTCAT-CCACTCA-TTTTTCAACATAAGTTGGTTCGGTCCTCCAGTCG 194 Query 63 GTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTT 122 ||| |||||| ||||| ||||||| |||| |||||||||||||||||| |||||||| || Sbjct 193 GTA-TTACCCGACCTT-CAACCTGGCCAT-GGATAGATCGCCCGGTTT-CGGGTCTAATT 138 Query 123 CCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 || ||||||| | ||||||| ||||||||| ||| | ||||| ||||||||||||||||| Sbjct 137 CC-AGCGACT-GTCGCCCTATTAAGACTCGGTTTCC-CTACGGCTCCCCTATTCGGTTAA 81 Query 183 GCTTTGCCACTGAAAAT-AAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAAC 241 ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 80 CCTT-GCCACTGAAAATTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCATC 22 Query 242 A-AAG--TGGGCTCCCACTGC 259 | ||| ||||||||| || Sbjct 21 ACAAGGACAGGCTCCCACAGC 1 >seq15380 Length=293 Score = 251 bits (278), Expect = 2e-64 Identities = 223/267 (84%), Gaps = 9/267 (3%) Strand=Plus/Plus Query 3 TCCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTA 62 ||||||||||| |||| ||| ||| |||| |||| |||| |||||||||||||||||| Sbjct 30 TCCGATCCACAACTCATCCCG-TAA-TTTTGCAACATTAGTGGGTTCGGTCCTCCAGTTA 87 Query 63 GTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTT 122 ||| ||||| |||||| ||||||| ||| ||||||||||| | | ||||||||||| | Sbjct 88 GTA-TTACCTAACCTT-CAACCTGGTCAT-GGATAGATCGCGCCGGTTTCGGGTCTACT- 143 Query 123 CCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 || ||| |||| |||||||| ||||||||||||| ||||||| |||| ||||| |||| Sbjct 144 CCTAGCAACTATACGCCCTATTAAGACTCGCTTT-CGCTACGGATCCCTTATTCAGTTAT 202 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAAC- 241 ||| || ||| ||| ||| |||||||||||||||||||||||||||||||||| ||| Sbjct 203 CCTT-GCTACTAAAAGTAACTCGCTGACCCATTATACAAAAGGTACGCAGTCACATAACT 261 Query 242 AAAGTGGGCTCCCACTGCTTGTACGCA 268 ||| | ||||| |||||||||| ||| Sbjct 262 AAATTATGCTCCTACTGCTTGTATGCA 288 >seq77926 Length=1131 Score = 230 bits (254), Expect = 6e-58 Identities = 298/398 (75%), Gaps = 23/398 (6%) Strand=Plus/Minus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 ||||||||| || ||||||||||||| | | ||||| | ||| ||||||| || Sbjct 837 TTTTCAACGTATATCAGTTCGGTCCTCCATTCCAT-GTTACTGGAACTT-CAACCTGGCC 780 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTA-GACGCCCTAGTAAGA 148 || || |||||| | ||||| || ||||| |||| ||||| | ||||||| ||||| Sbjct 779 ATGGG-TAGATCACAAGGTTT-CGCGTCTACC-CCCACTGACTATGTCGCCCTATTAAGA 723 Query 149 CTCGCTTTTCGCTACGCCTCC---CCT---ATTCGGTTAAGCTTTGCCACTGAAAA-TAA 201 |||||||| |||| || || | ||| |||| |||| ||| |||| ||| | ||| Sbjct 722 CTCGCTTT-CGCTTCGGCTTCGAACCTTAAATTC--TTAACCTT-GCCAATGAGGAGTAA 667 Query 202 GTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTT 261 ||| | |||||| ||||||| |||| ||| ||| || |||| | || |||| Sbjct 666 CTCGTAGGATCATTATGCAAAAGGCACGCCGTCGCCC------GTAGGCTTCGACCGCTT 613 Query 262 GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCC 321 ||| || ||||||||||||||| |||||||||| | | | ||||||||||| ||||||| Sbjct 612 GTAGACACACGGTTTCAGGATCTTTTTCACTCCCTTATTCAGGGTTCTTTTCACCTTTCC 553 Query 322 CTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCC 381 ||||||||||| |||| ||||||||| |||| ||||||||||||| |||||| | Sbjct 552 CTCACGGTACTCGTTCGCTATCGGTCTCTCAGGAGTATTTAGCCTTAACAGATGGTTCTG 493 Query 382 CCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 | | ||||||||| |||| | || ||| ||||||| Sbjct 492 CTAGATTCAGACAGGATTTCACATGTCCCGCCCTACTC 455 >seq97778 Length=468 Score = 223 bits (246), Expect = 9e-56 Identities = 291/387 (75%), Gaps = 18/387 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || | ||||||| ||||| | ||||||| ||||||| || || Sbjct 440 CCACAGTTCATCCCAC-AACTTTT-CAACGTTGACGGGTTCGGGCCTCCAGCAGGTT-TT 384 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||| ||||| || |||| |||| || |||||| | ||| ||||| ||||| ||| || Sbjct 383 ACCCCACCTT-CACCCTGACCATGGG-TAGATCACACGGGTTTCGTGTCTAGC-CCCTGC 327 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC--CCTATTCGG--TTAAGC 184 || || |||||||| | ||||||||||| |||| ||||||| || || || |||||| Sbjct 326 GATTAAACGCCCTATTCAGACTCGCTTT-CGCTCCGCCTCCGGCCCGTTAGGCCTTAAGC 268 Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 | |||| || | ||| |||| | | |||||| ||||| | |||| ||||||| | Sbjct 267 TCA-CCACAGAGACTAACTCGCGGGCTCATTATGCAAAAAGCACGCCGTCACCCCGTA-- 211 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 ||||||| || ||||||| ||||||||||||||| ||||||||| ||||| ||| Sbjct 210 --GGGCTCCGACCGCTTGTAGGCATACGGTTTCAGGTACTATTTCACCCCCCTAATAGGG 153 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTC-AGTAGTATTTAG 363 || ||||| | ||| |||| |||| ||| ||||||||| ||| || |||| |||| Sbjct 152 GTACTTTTAAACATTCAGTCACCTTACTGTTTCGCTATCGGTC-GTCAAGGAGTACTTAG 94 Query 364 CCTTGGAGGATGGTCCCCCCATATTCA 390 |||||| | ||| || ||||| |||| Sbjct 93 CCTTGGGAGGTGGACCTCCCATGTTCA 67 >seq56836 Length=203 Score = 199 bits (220), Expect = 1e-48 Identities = 169/199 (85%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 ||||||||| || ||||||| ||||||||| || |||||| |||||| || ||||| | Sbjct 192 TTTTCAACGACGGTGGGTTCGGACCTCCAGTTCGT-GTTACCGAACCTT-CATCCTGCTC 135 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGAC 149 || ||||||||| | ||||| |||||||| | |||||| |||| |||||||| |||||| Sbjct 134 AT-GGATAGATCACTTGGTTT-CGGGTCTACT-CCCAGCAACTAAACGCCCTATTAAGAC 78 Query 150 TCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGA 209 ||| ||| | ||||| ||||||||||||||||| ||| || ||||| ||||| ||||||| Sbjct 77 TCGGTTTCC-CTACGGCTCCCCTATTCGGTTAACCTT-GCTACTGAGAATAATTCGCTGA 20 Query 210 CCCATTATACAAAAGGTAC 228 ||||||||||||||||||| Sbjct 19 CCCATTATACAAAAGGTAC 1 >seq40912 Length=229 Score = 188 bits (208), Expect = 2e-45 Identities = 190/235 (81%), Gaps = 14/235 (6%) Strand=Plus/Plus Query 66 GTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCC 125 ||||||||||||| |||||||||||| ||||||||| | ||||| |||||||| | || Sbjct 4 GTTACCCAACCTT-CAACCTGCCCAT-GGATAGATCACTTGGTTT-CGGGTCTAAT--CC 58 Query 126 AGCGA-CTA-GACGCCCTAGTAAGACTCGCTTTTCGCTACGCCT-CCCCTATTCGGTTAA 182 | ||| ||| ||||||||| ||||||||||||| |||||||||| | |||| | |||| Sbjct 59 AACGAACTAAGACGCCCTATTAAGACTCGCTTT-CGCTACGCCTACACCTAACGGTTTAA 117 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 || |||| | | | |||||||||||||||||||||||||||||||| |||| | Sbjct 118 GC-TTGCTCGTCAGATTAAGTCGCTGACCCATTATACAAAAGGTACGCTGTCAGGC---- 172 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCT 297 | | |||| |||| ||||| |||| ||||||||||| || |||||||||||| Sbjct 173 TTGCGCCCTCCAACTGTTTGTAAGCATCCGGTTTCAGGAACTCTTTCACTCCCCT 227 >seq57391 Length=202 Score = 154 bits (170), Expect = 4e-35 Identities = 149/189 (79%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 232 GTCACCCAACAAAGTGGGCTCCCACTG-CTTGTACGCATACGGTTTCAGGATCTATTTCA 290 ||||||| |||| |||||||||||||| ||||| || ||||||| ||||||||| Sbjct 3 GTCACCCCACAA-GTGGGCTCCCACTGACTTGTCTGCTATTAGTTTCAGTTTCTATTTCA 61 Query 291 CTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGT 350 ||||||| | ||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 62 CTCCCCTAACAGGGGTACTTTTCACCTTTCCCTCACGGTACTAGTTCACTATCGGTCATC 121 Query 351 CAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCC 410 | ||||||||||||| |||||| | || ||||| || ||||| |||| | Sbjct 122 AACGAGTATTTAGCCTTACGCAATGGTCTGCGCAGATTCACACCGGGTTTCACGTGTCCG 181 Query 411 GTCCTACTC 419 || |||||| Sbjct 182 GTGCTACTC 190 >seq9294 Length=316 Score = 138 bits (152), Expect = 3e-30 Identities = 102/118 (86%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 |||||| |||||| |||||||||||||||||| ||||||||||||||||| || |||| | Sbjct 315 CGGGGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTAAGGAGTACT 256 Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||||||| |||| |||||| || || |||||||| | |||| |||| |||| |||||| Sbjct 255 TAGCCTTCGAGG-TGGTCCTCCGATGTTCAGACAGAATTTCACGTGTTCCGCCCTACT 199 >seq104094 Length=405 Score = 111 bits (122), Expect = 4e-22 Identities = 173/233 (74%), Gaps = 16/233 (7%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||||||||| || | ||||||||| | |||||||||||||| | || ||| Sbjct 253 CCACAGGTCATCCCAAGAC--TTTTCAACGTCAACGGGTTCGGTCCTCCACTGTGT-GTT 197 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| | | |||||||||||||| || |||||| | ||| ||||| ||||| | | | Sbjct 196 ACCACAGC-TTCAACCTGCCCAT-GGGTAGATCACACGG-TTTCGCGTCTA-CTACTACT 141 Query 129 GACTA-GACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC---CCT--ATTCGGTTAA 182 ||||| | ||||||| | |||||||| |||||||||| |||| ||| | || |||| Sbjct 140 GACTATGGCGCCCTATTCAGACTCGC-TTTCGCTACGGCTCCGGACCTGAAGTC-CTTAA 83 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA 235 | |||| | | ||| ||| ||| | | |||||| ||||||| |||| |||| Sbjct 82 -CCTTGCTAGTAAAAGTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCA 31 >seq39530 Length=231 Score = 93.3 bits (102), Expect = 1e-16 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 337 CACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAA 396 ||||||||||| | || |||| |||| |||||||| |||||||||||| |||||||| | Sbjct 3 CACTATCGGTCGCTAAGGAGTACTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGACAGA 62 Query 397 GTTTCTCGTGCTCCGTCCTACTCG 420 |||| |||| |||| |||||||| Sbjct 63 ATTTCACGTGTTCCGCCCTACTCG 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1240244768768