Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq92352 212 1e-52 seq1165 118 2e-24 seq7305 105 1e-20 >seq92352 Length=561 Score = 212 bits (234), Expect = 1e-52 Identities = 230/304 (76%), Gaps = 7/304 (2%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||||||| |||||||||| |||||| ||||||||||||||||||||| Sbjct 110 GGCATGGCTGGATCAGGGTTGCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 169 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| ||| |||||||||||| |||||||||| | ||| ||||||| | |||| ||| Sbjct 170 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGCTGATCATCCTCTCAAATCAGCTATAGAT 229 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 || | |||||| ||| ||| | ||||||| | |||||| ||| || ||||| || Sbjct 230 CGCAGCCTTGGTAGGCCTTTACCCCACCAACAAGCTAATCTAACGCAGGCTCATCTATCC 289 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 || | | | || | |||| || |||||||||||||| ||||| Sbjct 290 GCAGCAGCGCAAGCGCCA------CTTTTAATCCGAAGATATTATGCGGTATTAACGTTC 343 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 ||||||||||| ||| || | | || ||| || || || ||| ||||||||||||||||| Sbjct 344 GTTTCCAAACGGTATCCCCCACAGATAGGTAGATTCCT-ACGCGTTACTCACCCGTCCGC 402 Query 301 CACT 304 |||| Sbjct 403 CACT 406 >seq1165 Length=359 Score = 118 bits (130), Expect = 2e-24 Identities = 145/199 (73%), Gaps = 17/199 (9%) Strand=Plus/Plus Query 109 CCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGA 168 || |||| |||||||||||||||| || ||| | |||||||||||||||| |||| Sbjct 1 CCAGCTAAGGATCGTCGGCTTGGTGCGCCTTTACCACACCAACTACCTAATCCTACGCGG 60 Query 169 GCCCATCTTTCAGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCG 228 || |||| || |||||||||||||| || | | | |||| || || Sbjct 61 GCTCATCCCTCGGCGATAAATCTTTG------GACTTACGTCATC----------ATCCG 104 Query 229 GTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTAC 288 |||||||| |||||||||| |||||||| | | ||||| || | |||| ||||| Sbjct 105 GTATTAGCAGTCGTTTCCAACTGTTATTCCGAACCAAGGGGCAGATT-CCCACGCGTTAC 163 Query 289 TCACCCGTCCGCCACTAAG 307 ||||||| |||||||||| Sbjct 164 GCACCCGTGCGCCACTAAG 182 >seq7305 Length=327 Score = 105 bits (116), Expect = 1e-20 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| |||||| || | |||||||| || || ||||||||||||||||||||| Sbjct 240 GGCATGGCTAGATCAGGCTTGCGCCCATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAG 299 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATG 88 ||||||||||||||||||||||||| || Sbjct 300 GAGTCTGGGCCGTGTCTCAGTCCCAGTG 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 997310226432