Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01001690.1 Length=455 Score E Sequences producing significant alignments: (Bits) Value seq23230 176 1e-41 seq78176 147 6e-33 seq5956 138 3e-30 seq58552 102 2e-19 >seq23230 Length=268 Score = 176 bits (194), Expect = 1e-41 Identities = 199/265 (75%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 3 ATCAG--GAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60 ||||| ||||| || ||||| || |||| || || || || || || || || |||| Sbjct 5 ATCAGACGAACA--TCCCGGGCGCCCGCGCTGAGCGCAGACTCCCGAATAGCGCGGCGCT 62 Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120 | |||||||||||| |||| || || || | ||||| | ||||| || | | ||| Sbjct 63 CAACCTGGGTGGACATGCAGGGCACACAAACGAGCACCCTGGGGCTTGGTTTAATGAATT 122 Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180 || | ||||| || || |||||||| | ||||| |||||||||| ||| || |||| Sbjct 123 TGCTCTCGTGCACTTTCTTGATGAAATGCTGCAACATCTTCTCGGTGACAAGAAAATCGG 182 Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240 |||| || |||||||||| ||||||||||| | ||||| || || || |||||||||| Sbjct 183 CGATAACACCGTCTTTCAGGGGACGAATGGCGGTGATATTCCCCGGCGTGCGGCCGAGCA 242 Query 241 TGCGCTTGGCCTCGGTGCCGACGGC 265 | |||||||| ||| | || ||||| Sbjct 243 TACGCTTGGCTTCGCTACCTACGGC 267 >seq78176 Length=1116 Score = 147 bits (162), Expect = 6e-33 Identities = 278/410 (68%), Gaps = 12/410 (3%) Strand=Plus/Plus Query 3 ATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCC 62 |||||| |||| || || || || || || ||| || ||||| || |||||||| || Sbjct 556 ATCAGGTACACCTCGCGAGCGCCAGCACCGTAGGCAGACTCACGAATTGCACGACGTTCT 615 Query 63 ACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACTG 122 || || || || || ||||| || || | | | |||||| ||| || || | Sbjct 616 ACTTGAGTCGATCCACATGGAACACAAATAATAATTCTTGGGCTGCCCTGAAGAAAGCGA 675 Query 123 TTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGCG 182 || || || ||||| |||||||||| || ||||| |||| ||| | |||||||| Sbjct 676 TTCTCTTGCACCTTTTTGATGAAGTGCTTAAGCATTATCTCAGTCACGTTAAAGTCGGCT 735 Query 183 ATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATG 242 ||||| || |||||||| || | || || || ||| || || | ||| | ||| Sbjct 736 ATCACACCATCTTTCATTGGTCTGATTGCTTTGATCGAGCCCGGCGTTCTGCCCAACATT 795 Query 243 CGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTA---------CCATGGGTC 293 | ||| || || | ||| || |||| | ||||| | || ||| | || Sbjct 796 CTCTTCGCTTCTGAGCCAACCGCAAGTATGCTTTTGTTGTTCATGCCGCCGCCAGGAGTG 855 Query 294 ---CGAATGGCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATA 350 || || ||||||||||| |||||||||| | |||||| || || || ||| Sbjct 856 TAGCGGATCGCCACAACCGACGGCTCATTCAAAATGATACCTTTTTCTTTAACATAGATA 915 Query 351 AGGGTGTTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCC 400 ||||| ||||| ||||| |||||||| | | |||| ||||||||| ||| Sbjct 916 AGGGTATTGGCGGTGCCGAGGTCAATCGCCAAATCGTTGGAAAACAAGCC 965 >seq5956 Length=333 Score = 138 bits (152), Expect = 3e-30 Identities = 208/293 (71%), Gaps = 2/293 (1%) Strand=Plus/Plus Query 78 CACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACTGTTTTCGTGAACCTTG 137 || || || || || || |||||||||||||| | | ||||| | || || || Sbjct 42 CAAGGCACACAAATTAGTACACGAGGGCTGGGAGGGATCAAACTATGAGAATGTACTTTC 101 Query 138 TTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTG-AAGTCGGCGATCACGCCGTCTTT 196 ||||| |||| ||| ||||| || || || ||| ||||| || |||||||| ||||| Sbjct 102 TTGATAAAGTGCTGAAGCATTTTTTCAGTCAC-CTGAAAGTCTGCAATCACGCCATCTTT 160 Query 197 CATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATGCGCTTGGCCTCGGT 256 | ||| ||||| || | ||||| || || ||||| || ||||| |||||||| || Sbjct 161 TAACGGGCGAATAGCTGTGATATTTCCCGGCGTACGACCCAGCATTCGCTTGGCTTCTAC 220 Query 257 GCCGACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGGCCACAACCGATGGCTC 316 || || ||| ||||| ||||||| ||| ||||| ||||||||||| ||||| Sbjct 221 ACCTACCGCATCGACAATTTTCTGTCCGTGATGATGACGAATAGCCACAACCGAAGGCTC 280 Query 317 ATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGTTGGCAGTGCCCA 369 ||| || || || || || || || ||||| || || || || || |||| Sbjct 281 ATTGAGCACAATGCCCTTTTCACGAACATAAATCAGCGTATTTGCGGTACCCA 333 >seq58552 Length=201 Score = 102 bits (112), Expect = 2e-19 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 3 ATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCC 62 |||||| ||| || | ||| ||||||| || |||||||| ||||| || || |||||| Sbjct 181 ATCAGGCGCACATCCCTGGCGCCGGCGCTGAGCGCCGATTCGCGGATCGCGCGGCGCTCC 122 Query 63 ACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACTG 122 ||||| || ||| | ||||| || |||| |||||| || || ||||| | | || || Sbjct 121 ACCTGCGTCGACATACACGGGACACAGACCAGCACCCGCGGACTGGGACGTATAAACTTG 62 Query 123 TTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTC 163 | || || || || || |||| ||||||||| ||||| Sbjct 61 CTCTCATGCACTTTCGCTATAAAGTGCTGCAGCATTTTCTC 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1352122518528