Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01001693.1 Length=610 Score E Sequences producing significant alignments: (Bits) Value seq76308 192 2e-46 seq90072 102 3e-19 >seq76308 Length=1237 Score = 192 bits (212), Expect = 2e-46 Identities = 344/501 (69%), Gaps = 1/501 (0%) Strand=Plus/Plus Query 23 GTGTGGTGCGGCGACCTCCCCTACATCTGGGCCCATGGGAAATGGCATTACCTGGCTGTC 82 || ||||| |||||| || ||| ||| |||||||| ||| ||||| || || || || Sbjct 737 GTCTGGTGTGGCGACATCACCTTCATTTGGGCCCAAGGGCGCTGGCACTATCTTGCCGTA 796 Query 83 GCGCTGGATCTTTGCTCGCGCCGGGTGGTGGCTTGGGCGTTGACCAGACACCCCGGACGC 142 | |||||||||| | ||| |||| || | |||||| | | | ||| || |||| Sbjct 797 GTCCTGGATCTTTACCGGCGTAGGGTCGTTGGTTGGGCTCTTTCAACACAACCTA-ACGC 855 Query 143 CGATCTGGCTATGCGGGCGCTGGATATGGCTTACCAGCCTGCACGACGACCTCATGGTCT 202 |||| | | | || |||| |||||||| || | | | || ||| | Sbjct 856 GAATCTCGTTGTTGCAGCATTGGACATGGCTTATATGCAAAGAGGTCAGCCCAGTGGAGT 915 Query 203 GCTGGTTCACTCGGATCAAGGGTCGCAGTATGCGAGTCGTTTATTTCGCCAGCGGCTGTG 262 || ||||| ||||| || |||||||| || | ||||| || || | ||||| Sbjct 916 CATGTTTCACAGCGATCAGGGAAGCCAGTATGCCAGCAGGTTATTCCGTCAAAGACTGTG 975 Query 263 GCGTTATCGCATGCGCCAGAGCATGAGTCGCCGGGGAAATTGCTGGGACAATGCGCCAAT 322 ||| ||||||||| || |||||||||||| | || ||||| |||||||| |||| || Sbjct 976 GCGATATCGCATGGAGCAAAGCATGAGTCGCAGAGGGAATTGTTGGGACAACTCGCCTAT 1035 Query 323 GGAGCGCGTGTTCCGCAGCTTGAAAACGGAGTGGATACCGACCACGGGTTACCGAACGGC 382 |||||| ||||| || || ||||| || || ||| | || | || || ||| Sbjct 1036 GGAGCGGGTGTTTCGAAGTTTGAAGACTGAATGGGTTCCATCAGTTGGCTATTCGACGAT 1095 Query 383 TCAAGAAGCCCAGCGCGATATCAGCCAATTCTTAATGCATCGGTACAACTGGATTCGCCC 442 || || | | ||||||||||| | | | || | || |||||| |||| || Sbjct 1096 GAGGGAGGCAAAACAAGATATCAGCCACTACCTGATAACTTACTATAACTGGGTTCGACC 1155 Query 443 CCATCGATTCAACGGTGGGCTGGCGCCAGCTCGGGCCGAAGAAAAACTTAACGTCGTGTC 502 ||||||| | || ||||||||||| ||| || |||||||||||||| |||| Sbjct 1156 GCATCGATATAGCGCCGGGCTGGCGCCCGCTGTAGCTGAAGAAAAACTTAATTCACTGTC 1215 Query 503 CGGGATTAGTTGACCACTACA 523 ||||| ||||||||||||||| Sbjct 1216 CGGGAATAGTTGACCACTACA 1236 >seq90072 Length=608 Score = 102 bits (112), Expect = 3e-19 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 208 TTCACTCGGATCAAGGGTCGCAGTATGCGAGTCGTTTATTTCGCCAGCGGCTGTGGCGTT 267 ||||||| || ||||| || || | ||||| |||||| |||| ||| ||||||| Sbjct 452 TTCACTCTGACCAAGGCAGTCATTACACCAGTCGACAATTTCGGCAGCAGCTATGGCGTT 393 Query 268 ATCGCATGCGCCAGAGCATGAGTCGCCGGGGAAATTGCTGGGACAATGCGCCAATGGAGC 327 | | || || |||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 392 ACCAAATTGAACAAAGCATGAGTCGCCGAGGAAATTGTTGGGACAATGCACCTATGGAAA 333 Query 328 GCGTGTTCCGCAGCTTGAAAACGGAGTGGATACCGACCAC-GGGTTACCG 376 | | ||| | || || |||||||| ||| | || | ||| |||||||| Sbjct 332 GATTTTTCAGGAGTTTAAAAACGGAATGGGTGCC-AGCACTTGGTTACCG 284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1844321636768