Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq75365 205 2e-50 seq2998 150 4e-34 seq8586 132 1e-28 seq7907 129 1e-27 seq94731 123 6e-26 seq5932 120 7e-25 seq17052 96.9 8e-18 seq1597 89.7 1e-15 seq100076 86.0 1e-14 >seq75365 Length=1304 Score = 205 bits (226), Expect = 2e-50 Identities = 293/404 (73%), Gaps = 9/404 (2%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || |||||||||||| |||||| |||| || || | | | | Sbjct 846 CGACTACGCATTTCTGCCTCGCCTTAGTGGCCGACTAACCCTACGCCGATTAGCGTTGCG 787 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||||| | |||| | |||| || |||||| | || |||||||| | Sbjct 786 TAGGAAACCTTGGGTTTTCGGTGTGCGGGTTTTTCACCCGCATTATCGTTACTCATGTCA 727 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 ||||||||||| | || | ||||| || || | || || |||| | || ||| Sbjct 726 GCATTCTCACTTCTGAT-ACCTCCAGCAGACTTT-ACAATCCACCTTCGCAGGCTTACAG 669 Query 178 GACGCTCCCCTACCCAACCACACAGGTTGC---CACAGCTTCGGCGGATAACTTAAGCCC 234 ||||||||||||| | | | | || | ||||||||| | ||| ||| ||||| Sbjct 668 AACGCTCCCCTACCATGCTAATAAATTAGCATCCGCAGCTTCGGTGTATAGCTTGAGCCC 609 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || ||||| || |||| | ||| ||||||||||||||||||| ||||| |||||| Sbjct 608 CGGTACATCTTCCGCGCAAACCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAAGGAT 549 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 ||||||||| ||||||||||||||| ||||| || | |||||| ||| |||||||| Sbjct 548 GGCTGCTTCTAAGCCAACCTCCTGGCTGTCTGGGCCTTTTCACATCGTTTTCCACTGAG- 490 Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | |||| ||| ||||||||| | |||||| ||||||||||| Sbjct 489 CTATACTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 446 >seq2998 Length=349 Score = 150 bits (166), Expect = 4e-34 Identities = 147/189 (78%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 211 AGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT----GACCA 266 ||||||||| || ||| ||||||| ||||| ||| ||| | | |||| ||||| Sbjct 161 AGCTTCGGCTCATGGCTTGAGCCCCGTTACATCTTCGCCGCAGGACAACTTATTAGACCA 220 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||||| | Sbjct 221 GTGAGCTGTTACGCTATCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTT 280 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 | |||| | |||||||||| || || | |||||||||||||||| | || ||| Sbjct 281 GGTCGTCCCACCTGCTTTCCCACTTAGCCATGAATTAGGGGCCTTAGCTGTAGGTCAGGG 340 Query 387 CTGTTTCCC 395 |||||||| Sbjct 341 TTGTTTCCC 349 >seq8586 Length=320 Score = 132 bits (146), Expect = 1e-28 Identities = 151/197 (77%), Gaps = 7/197 (4%) Strand=Plus/Plus Query 208 CACAGCTTCGGCGGATAA-CTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||| | ||| |||| |||| || ||||| |||||| | || ||||| Sbjct 82 CACAGCTTCGGTG-ATATGCTTATGCCCGATTA--TTATCCATGCGGAACCGCTCGACCA 138 Query 267 GTGAGCTATTACGCACTCTTTCAA-GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 ||||||| ||||||||||||| || | |||||||||||||||||||| |||||| |||| Sbjct 139 GTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTGGCTGTCA 198 Query 326 ACGCAACTCCACATCCT--TTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCT 383 ||| ||||| | | | | ||| || |||| ||| ||||||||| |||||| Sbjct 199 GTGCAGTTCCACCGCGTTATATCAACTTAGCATATACTTTGGGACCTTAGCTGGTGATCT 258 Query 384 GGGCTGTTTCCCTCTCG 400 ||| | ||||||||||| Sbjct 259 GGGTTCTTTCCCTCTCG 275 >seq7907 Length=324 Score = 129 bits (142), Expect = 1e-27 Identities = 143/191 (75%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 214 TTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGT 268 ||||| | || || ||||||| |||||| ||||||| | | ||| ||||||| Sbjct 35 TTCGGTGTGTAGTTTGAGCCCCGTTACATTTTCGGCGCAAAGACCCTTATTTAGACCAGT 94 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 ||||| |||||| ||||| || | |||||||||| |||||||| |||||||||| | | Sbjct 95 GAGCTGTTACGCTTTCTTTAAATGGTGGCTGCTTCTAAGCCAACATCCTGGTTGTTTTGG 154 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | || ||| |||||||||||| | || |||| ||| ||||| || | || ||| | Sbjct 155 GATCTTCACTTCCTTTCCCACTTAACTACAACTTGGGGACCTTAATCGACGGTCAGGGTT 214 Query 389 GTTTCCCTCTC 399 |||||||| || Sbjct 215 GTTTCCCTTTC 225 >seq94731 Length=517 Score = 123 bits (136), Expect = 6e-26 Identities = 232/336 (69%), Gaps = 15/336 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||| ||| |||||||||||||| ||||||| |||| |||| ||| ||| | || Sbjct 337 CGACTACTCCTTACGGCCTCGCCTTAGCTCCCGACTAACCCTGGGCGGACGAACCTTCCC 278 Query 61 CTGGAACCCTTGGATAAT--CGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGC 117 | |||| |||| || | ||||| || ||||| ||| || | || ||||||||| Sbjct 277 CAGGAAACCTT--ATCCTTACGGCGAACAGGATTTTAACCTGTTTTATCGTTACTCATGC 220 Query 118 CTGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 || |||||||||| || | | |||| | | | | |||||| ||| Sbjct 219 CTACATTCTCACTTCCAACCAGTCCAGGGTCGCTTGCCGCTTCCCCTTCACTCCTGTTGG 160 Query 178 GACGCTCCCCTACCCAACCACA--------CAGGTTGCCACAGCTTCGGCGGATAACTTA 229 ||||| |||||| ||| ||| || | | | | |||||| || || Sbjct 159 AACGCTTTCCTACCAAACTACAGTTAACTGTAGAGTCCTAGA-CTTCGGTACATCGTTTG 101 Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289 || |||| | |||| ||||||| || ||||| || ||| |||||||||||||| ||| | Sbjct 100 AGTCCCGAT-CATTTTCGGCGCAGATTCACTCGATGAGTCAGCTATTACGCACTGTTTAA 42 Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 | | ||||||| || |||||||| |||| |||||| Sbjct 41 ATGGTGGCTGCCTCTAAGCCAACATCCTCATTGTCT 6 >seq5932 Length=333 Score = 120 bits (132), Expect = 7e-25 Identities = 115/146 (79%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 240 CATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTG 299 |||||||||||| ||| || ||||||||||| ||||||||||||| || |||||||| Sbjct 109 CATTATCGGCGCCAAATTCCTCGACCAGTGAGCAGTTACGCACTCTTTAAATGATGGCTG 168 Query 300 CTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCA 359 |||| |||||||| ||||||||||| |||| || ||||| ||||||| | | Sbjct 169 CTTCTAAGCCAACATCCTGGTTGTCACGGCAATCTGACTTCCTTAAGAACTGAGT-ATGA 227 Query 360 CTTAGGGGCCTTAGCTGATGATCTGG 385 || ||| ||||||||| ||||||| Sbjct 228 TTTGGGGACCTTAGCTGGCGATCTGG 253 >seq17052 Length=288 Score = 96.9 bits (106), Expect = 8e-18 Identities = 97/121 (80%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATA-ACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACC 265 |||||||||||| ||| |||||| |||| | |||||| ||| ||| || ||| Sbjct 119 CCACAGCTTCGGTA-ATACACTTAATGCCCGATT-ATTATCCACGCACGATCGCTCGACT 62 Query 266 AGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 |||||||| ||||||||||||| || || ||||||||||||||||||| |||| | |||| Sbjct 61 AGTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTC 2 Query 325 T 325 | Sbjct 1 T 1 >seq1597 Length=357 Score = 89.7 bits (98), Expect = 1e-15 Identities = 99/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || ||||||||||||| |||||| |||| | ||||| | ||| || Sbjct 231 CGACTACGCATTTCTGCCTCGCCTTAGGGGCCGACTAACCCTGCGCAGATTAGCTTTACG 172 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCAC-CCGTCACACGCTACTCATGCCT 119 | ||||||||||||| |||||| | | ||| ||| | || || |||||||| | Sbjct 171 CAGGAACCCTTGGATTTTCGGCGACAGTGTTTCTCACACTGTTTATCGTTACTCATGTCA 112 Query 120 GCATTCTCACT 130 |||||| |||| Sbjct 111 GCATTCGCACT 101 >seq100076 Length=444 Score = 86.0 bits (94), Expect = 1e-14 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||||||||||||||||| || |||| |||| || || | || Sbjct 147 CGACTACGCCTTTCGGCCTCGCCTTAGGACCCGGCTAACCCTGGGCGGATTTACCTTCCC 88 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | |||| |||| || ||||| | |||||| |||| | | || |||||| ||| Sbjct 87 CAGGAAACCTTAGACTTACGGCGAAAAGGATTCTCACCTTTTTTATCGTTACTCAAGCCC 28 Query 120 GCATTCTCACTCGCATCAACTCCACCA 146 |||| ||||| ||| ||||| || Sbjct 27 GCATATTCACTTCCATACGCTCCAGCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176314626048