Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq6190 129 5e-28 seq20538 105 6e-21 seq16487 105 6e-21 >seq6190 Length=332 Score = 129 bits (142), Expect = 5e-28 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| || |||| ||||| |||||||| | || | || ||| |||||||||| ||| Sbjct 30 TTTTTGCGATTTGCTCCACCTCGCGGTATTGCATCGCTTTGTCCATACCATTGTAGCACG 89 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 | || | ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 90 TTTGCATCCCTAGACATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 149 Query 156 TGTCAC 161 || ||| Sbjct 150 TGACAC 155 >seq20538 Length=277 Score = 105 bits (116), Expect = 6e-21 Identities = 113/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| ||||| | ||| | |||| || ||| ||||| ||||||| Sbjct 235 TCGAGTTGCAGACTCCAATCTGAACTGGGCCCAGCTTTAAGG-ATTGGCTCCACCTCGCG 177 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || ||||||||| ||||||| ||||||| ||||||| | ||||||||| Sbjct 176 GTATTGCTTCCCTCTGTACTGGGCATTGTAGCACGTGTGCAGCCCTAGACGTAAGGGCCA 117 Query 121 TGAGGACTTGACGTCATCCCCACCTTCC 148 | ||||||||||| |||||||||||| Sbjct 116 TACTGACTTGACGTCGTCCCCACCTTCC 89 >seq16487 Length=290 Score = 105 bits (116), Expect = 6e-21 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 74 CTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACG 133 ||||| | |||||||| ||||||| ||||| |||| |||||||||||||||||||||| Sbjct 22 CTGTAGATGCCATTGTAGCACGTGTGTAGCCCAACCCGTAAGGGCCATGAGGACTTGACG 81 Query 134 TCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||| ||||||||||| | || |||| Sbjct 82 TCATCCACACCTTCCTCCCGCTTATCAC 109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415560117440