Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq104849 168 1e-39 seq94135 156 7e-36 seq59121 154 2e-35 seq3379 149 1e-33 seq57215 129 1e-27 seq7305 125 1e-26 >seq104849 Length=397 Score = 168 bits (186), Expect = 1e-39 Identities = 208/275 (76%), Gaps = 7/275 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| | ||||||||||| ||| || || | |||||||| | ||| | Sbjct 127 CCCACGCTTTCGTCCATCAGCGTCAGTATATGTT-AGTAACCTGCCTTCGCAATCGGTAT 185 Query 61 TCCTCCGTA-TATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 || | ||| |||||| ||||||||||||||||| |||| || | || ||| | Sbjct 186 TC-TATGTAATATCTATGCATTTCACCGCTACACTACATATTCTAGTTACTTCACCATAA 244 Query 120 CTCAAGAAAAACAGTTTCAAATGC-AGGCTATGGGTTGAGCC-CATAGTTTTCACATCTG 177 ||||||| | |||| |||| || | ||| ||||||||| || | |||||| ||| Sbjct 245 CTCAAGACCACCAGTATCAAGGGCAATTCTA-CGGTTGAGCCGCAGA-CTTTCACCCCTG 302 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 |||| ||||||||| ||||||| ||||||| | ||||||||||||| | ||| Sbjct 303 ACTTAATGGCCCGCCTACGGACCCTTTAAACCCAATGATTCCGGATAACGCTCGGATCCT 362 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCG 272 |||||||||||||||||||||||| ||||||||| Sbjct 363 CCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCG 397 >seq94135 Length=527 Score = 156 bits (172), Expect = 7e-36 Identities = 206/283 (73%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| ||| ||||||| | | | || | | |||||||| | ||||| Sbjct 126 CCCACGCTTTCGTCCCTGAGCGTCAATCCAGGCCTAGTGAGCTGCCTTCGCTATCGGTGT 185 Query 61 TCCTCCGT-ATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 || | || ||||||| |||||||||||||||| |||||| | || | | | Sbjct 186 TC-TATGTCATATCTAAGCATTTCACCGCTACATGACATATTCCGCCCACTTCGACCGAA 244 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 |||||| ||||| |||| |||| | ||| ||| || |||||| ||||| Sbjct 245 TTCAAGACTTACAGTATCAATGGCAGTTTCACAGTTAAGCTGTGAGATTTCACCACTGAC 304 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || |||||| | ||||||| ||||||| | |||||||||||||||| ||| | Sbjct 305 TTATAAGTCCGCCTGCGGACCCTTTAAACCCAATGATTCCGGATAACGCTTGCACCCTCC 364 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||||||||||||||||||||||| ||||||||| |||||||| Sbjct 365 GTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTATTC 407 >seq59121 Length=200 Score = 154 bits (170), Expect = 2e-35 Identities = 154/197 (78%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 42 CCGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATT 101 ||||||||||||||||||||| ||| ||||||||| |||||||| |||||| |||||| Sbjct 3 CCGCCTTCGCCACTGGTGTTCTTCCCAATATCTACGAATTTCACCTCTACACTGGGAATT 62 Query 102 CCGATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGG-GTTGAGCC 160 || | ||||| | | |||||||| |||| ||||| ||| | | ||| ||||||| Sbjct 63 CCACTAACCTCTTCCGGACTCAAGATCTCCAGTATCAAAGGCA-GTTCTGGAGTTGAGCT 121 Query 161 CATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCG 220 | | |||||| |||||||| ||||||||| ||| |||||| |||| ||| |||| Sbjct 122 CCAGGATTTCACCTCTGACTTAAAGACCCGCCTACGCGCGCTTTACGCCCAGTAATTCCG 181 Query 221 GATAACGCTTGCCACCT 237 | |||||||||| ||| Sbjct 182 AACAACGCTTGCCCCCT 198 >seq3379 Length=347 Score = 149 bits (164), Expect = 1e-33 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||| |||||| |||||| | |||||||||| |||||| Sbjct 215 CCCACGCTTTCGTCCCTCAGTGTCAGTATTAGTCCAGAATGTTGCCTTCGCCATTGGTGT 156 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| | || |||||||||||||||||||||| | |||||| | ||||| | || Sbjct 155 TCCTTCTGATCTCTACGCATTTCACCGCTACACCAGAAATTCCCCATTCCTCTACTATAC 96 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || | |||| |||||||||| |||||||||| | |||||||||||||| Sbjct 95 TCTAGTTTAGCAGTATCAAATGCAGTTCCAAGGTTGAGCCCTGGGCTTTCACATCTGACT 36 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAA 215 | | | || |||||| |||||||| |||| ||| Sbjct 35 TACTATACCACCTACAGACCCTTTACGCCCAGTAA 1 >seq57215 Length=202 Score = 129 bits (142), Expect = 1e-27 Identities = 144/191 (75%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 43 CGCCTTCGCCACTGGTGTTCCTCCGTA-TATCTACGCATTTCACCGCTACACACGGAATT 101 |||||||||||||||||||| || || |||||||| |||||||| |||||| ||| || Sbjct 5 CGCCTTCGCCACTGGTGTTCTTCACTAATATCTACGAATTTCACCTCTACACTAGGAGTT 64 Query 102 CCGATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCC 161 || | ||||| | | |||| ||| ||||| ||||| |||| ||||||||||| Sbjct 65 CCATTCACCTCTTCCGGACTCTAGACTGACAGTATCAAAGGCAGTTCCGGGGTTGAGCCC 124 Query 162 ATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGG 221 | |||||| |||||| | |||||||| ||| |||||| |||| ||| |||| Sbjct 125 CGGGATTTCACCCCTGACTGATCAGTCCGCCTACGCGCGCTTTACGCCCAGTAATTCCGA 184 Query 222 ATAACGCTTGC 232 | |||||| || Sbjct 185 ACAACGCTAGC 195 >seq7305 Length=327 Score = 125 bits (138), Expect = 1e-26 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 119 ACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGA 178 |||||||| | |||| | ||| |||| ||||||||||| | |||||| ||| | Sbjct 8 ACTCAAGACTAGCAGTATTAAAGGCAGTTCCAGGGTTGAGCCCTGGGATTTCACCTCTAA 67 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 ||| | |||||||| || |||||| |||| ||| |||| | |||||| || ||| Sbjct 68 CTTACTAATCCGCCTACGTGCGCTTTACGCCCAGTAATTCCGAACAACGCTAACCCCCTC 127 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||||| ||||||||| || || || |||||| Sbjct 128 CGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGTTTCTTTTCCAGGTA 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 827923618592