Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq102405 116 4e-24 seq17965 100 3e-19 seq497 73.4 4e-11 >seq102405 Length=420 Score = 116 bits (128), Expect = 4e-24 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 71 GCTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTA 130 |||||||||||||||||| | ||| |||||||||||||| | ||||||||||||||||| Sbjct 420 GCTTTCGCACCTGCTCGACCTGTCCGTCTCGCAGTCAAGCAACCTTATGCCATTGCACTA 361 Query 131 ACCTCACGATGTCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||||| ||||||||| ||| | ||||||| ||||||||||| Sbjct 360 TCAGTACGATTTCCGACCGTACCTAGGTTACCTTCGCACTCCTCCGTTA 312 >seq17965 Length=285 Score = 100 bits (110), Expect = 3e-19 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 97 TCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAG 156 ||||||||| |||| ||||||||||||||||||||| | ||||||||||| | |||| Sbjct 11 TCTCGCAGTTAAGCTGGCTTATGCCATTGCACTAACCGTATGATGTCCGACCATACTTAG 70 Query 157 CTGACCTTCGTGCTCCTCCGTTA 179 | |||||||||||||||||||| Sbjct 71 CCAACCTTCGTGCTCCTCCGTTA 93 >seq497 Length=364 Score = 73.4 bits (80), Expect = 4e-11 Identities = 66/83 (80%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 97 TCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAG 156 |||||||||||||| ||| |||| || |||||||| ||||| ||||||||| |||| Sbjct 11 TCTCGCAGTCAAGCACTCTTTTGCCTTTACACTAACCATACGATTTCCGACCGTATTTAG 70 Query 157 CTGACCTTCGTGCTCCTCCGTTA 179 ||| | | |||||||||||| Sbjct 71 AGTACCATAGCGCTCCTCCGTTA 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473099210624