Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq27207 242 6e-62 seq35742 176 7e-42 seq96380 149 1e-33 seq81472 140 5e-31 seq102812 127 3e-27 seq103157 113 7e-23 seq11176 102 1e-19 >seq27207 Length=258 Score = 242 bits (268), Expect = 6e-62 Identities = 206/254 (81%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 22 ATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAA 81 |||| ||||||| |||||||| || || ||||| ||| || |||||| | || | ||| Sbjct 258 ATGCTTTCAGCTGTTATCCCTGCCCGACGTAGCTACCCTGCGATGCACCTAGCGGCGCAA 199 Query 82 CTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAA 141 | || |||||| ||| ||||| || |||||||||||||| | |||||||||| Sbjct 198 CAGGATCACCAGGGGTCAGTCCAACCTAATCCTCTCGTACTAAAGTTGACTCCTCTCAAG 139 Query 142 TTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCG 201 ||| | |||||||| | |||||||||||| ||| ||| || || ||||||||||||||| Sbjct 138 TTTGCAACGCCCACAGCAGATAGGGACCGACCTGGCTCACGCCGGTCTGAACCCAGCTCG 79 Query 202 CGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAG 261 ||| || ||||||| ||||||||||| ||||||||||||| |||||||||||||||| | Sbjct 78 CGTACCGCTTTAATAGGCGAACAGCCTAACCCTTGGGACCGCCTTCAGCCCCAGGATGCG 19 Query 262 ACGAGCCGACATCG 275 | |||||||||||| Sbjct 18 ATGAGCCGACATCG 5 >seq35742 Length=239 Score = 176 bits (194), Expect = 7e-42 Identities = 144/174 (83%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60 ||||| |||||| |||||||||| |||||| ||||||| |||| || ||||| |||| Sbjct 67 CGAGGGAGGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCATACATAGCTACCCA 126 Query 61 GCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 ||| || | |||| | || |||||| |||||||||| ||| || ||||||||||||||| Sbjct 127 GCTGCGCTCCTGGCGGAACGACTGGTACACCAGAGGTATGTTCAACCCGGTCCTCTCGTA 186 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACT 174 ||| || || |||||||||||||| | ||||||||| | |||||||||| |||| Sbjct 187 CTAGGGTCAACTCCTCTCAAATTT-CGACGCCCACGGCAGATAGGGACCAAACT 239 >seq96380 Length=491 Score = 149 bits (164), Expect = 1e-33 Identities = 127/157 (81%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| | | |||| |||||||||| |||||| |||||| | ||| ||| ||||| ||| | Sbjct 335 GAGGTGAGTTTCGTGCTTAGATGCTTTCAGCGCTTATCTCATCCGAACGTAGCTACCCTG 394 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||||| |||| ||||| ||| ||| ||||||| ||||| |||||||||||||||| Sbjct 395 CGATGCAGCTGGCGCCACAACAGGTACACTAGAGGTTCGTCCACCCCGGTCCTCTCGTAC 454 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGAC 158 || | ||| |||||||||||||| |||||||| || Sbjct 455 TAGAGGCAGGTCCTCTCAAATTTCTAACGCCCACAAC 491 >seq81472 Length=922 Score = 140 bits (154), Expect = 5e-31 Identities = 116/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 || ||| ||||||||||||||||| |||||| ||||| || ||||| ||| || |||| Sbjct 780 GGTTTCCCGCTTAGATGCCTTCAGCGGTTATCCATTCCACACATAGCTACCCTGCAATGC 839 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 |||| ||||| ||| |||||| ||| ||||||||||||||||||||||||| ||| Sbjct 840 TGCTGGCGCAACAACAGGTCCACCAGTGGTGTGTCCATCCCGGTCCTCTCGTACTAGGGA 899 Query 128 CAGCTCCTCTCAAATTTCCTAC 149 ||| |||| |||| ||||||| Sbjct 900 CAGATCCTATCAATATTCCTAC 921 >seq102812 Length=416 Score = 127 bits (140), Expect = 3e-27 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 7 GGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATG 66 ||||||| ||||||||||||||||| |||||| ||| | ||||| |||||| || Sbjct 273 GGGCTTCCCGCTTAGATGCCTTCAGCGGTTATCCTGTCCGTTCATAGCTACCCAGCACTG 332 Query 67 CACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGG 126 | |||||| ||||||||| |||||| || || || |||||||||||||||||| || Sbjct 333 CCATTGGCATGACAACTGGTCCACCAGTGGAACGTTCACCCCGGTCCTCTCGTACTAGGG 392 Query 127 ACAGCTCCTCTCAAATTTCCTAC 149 || ||| |||||||| |||||| Sbjct 393 GCAACTCTTCTCAAATCTCCTAC 415 >seq103157 Length=413 Score = 113 bits (124), Expect = 7e-23 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 9 GCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCA 68 |||| | |||||||||| |||||| |||||| ||| ||||||||| ||| || | | Sbjct 264 GCTTGGCGCTTAGATGCTTTCAGCGCTTATCTAGTCCGAACTTAGCTACCCGGCGCTACC 323 Query 69 CTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGAC 128 ||| || | ||| || |||||| |||| ||| ||| ||||||||||||||||| | Sbjct 324 GTTGACACGATAACCGGAACACCAGCGGTTCGTCATTCCTGGTCCTCTCGTACTAAGAAA 383 Query 129 AGCTCCTCTCAAATTTCCTACGCCCAC 155 | || ||||| |||||||||||||| Sbjct 384 TGAACCCCTCAACTTTCCTACGCCCAC 410 >seq11176 Length=310 Score = 102 bits (112), Expect = 1e-19 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 7 GGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATG 66 ||||||| |||||||||| |||||| ||||||| ||| || ||||| |||| | ||| Sbjct 167 GGGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCGTACATAGCTACCCAACAATG 226 Query 67 CACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGG 126 | |||| |||| ||| |||||| ||| ||||| ||||||||||||||||| | Sbjct 227 CCTCTGGCGAGACAATTGGAACACCAGGGGTACGTCCACTCCGGTCCTCTCGTACTAGGA 286 Query 127 ACAGCTCCTCTCAA 140 ||||| | ||||| Sbjct 287 GCAGCTTCCCTCAA 300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 779974374272