Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq92352 367 3e-99 seq95536 279 1e-72 seq33726 197 3e-48 seq7305 163 7e-38 seq1165 125 2e-26 seq46632 82.4 2e-13 seq28214 78.8 2e-12 >seq92352 Length=561 Score = 367 bits (406), Expect = 3e-99 Identities = 336/417 (81%), Gaps = 12/417 (3%) Strand=Plus/Plus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || ||||||||||| | |||||||||| |||||||||||||||| |||||| |||| || Sbjct 75 GTGCTTTACAACCCTAGAGCCTTCTTCACACACGCGGCATGGCTGGATCAGGGTTGCCCC 134 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 135 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCA 194 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 |||||||| ||||||||||| | |||||| ||||| |||| ||| |||| ||||||| Sbjct 195 ATGTGGCTGATCATCCTCTCAAATCAGCTATAGATCGCAGCCTTGGTAGGCCTTTACCCC 254 Query 181 GCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCT 240 ||||| |||||||| | || |||| | || || || | ||| | || || Sbjct 255 ACCAACAAGCTAATCTAACGCAGGCTCAT-CTATCCGCAGCAGCGC-AAG---CGCCACT 309 Query 241 TTGGTCTTGCGACG---TTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCA 297 || | | ||| | ||||||||||||| | |||||||| | |||||||| | Sbjct 310 TT--TAATCCGAAGATATTATGCGGTATTAACGTTCGTTTCCAAACGGTATCCCCCACAG 367 Query 298 TCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTG 357 ||| || |||| | | ||||||||||||||||||||||||||| ||| |||||||| Sbjct 368 ATAGGTAGATTCCTACGCGTTACTCACCCGTCCGCCACTCGTCAGCAAAG-AGCAAGCT- 425 Query 358 CTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| ||||||||||||||||||||||||||| || | || ||||||||||||||||| Sbjct 426 CTTTCTGTTACCGTTCGACTTGCATGTGTTAAGCATACCACCAGCGTTCAATCTGAG 482 >seq95536 Length=505 Score = 279 bits (308), Expect = 1e-72 Identities = 238/291 (82%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| ||||||||||| ||||||||| ||||||||||| |||| ||||||||| | || Sbjct 505 TGGCTGATCATCCTCTCAAACCAGCTAGAGATCGTCGCCTTGGTGAGCCATTACCTCACC 446 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| || |||| | ||| || | || ||| |||||| ||||| ||||| Sbjct 445 AACTAGCTAATCTCACTTGGGCTAATCAAATGGCGAAAGGTCCGAAGATCCCCTCCTTTG 386 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 ||| ||||||||||||||||||| |||||||| ||| |||||| |||| |||| Sbjct 385 GTCCGTAGACGTTATGCGGTATTAGCAGTCGTTTCCAACTGTTGTCCCCCACCATAAGGC 326 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | |||||| ||||||||||||||||||| ||||||| | |||||||| | Sbjct 325 ATATTCCCAAGCATTACTCACCCGTCCGCCGCTCGTCATC-TCCTAGCAAGCT-AGGAAT 268 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 267 GTTACCGCTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCAATCTGAG 217 >seq33726 Length=242 Score = 197 bits (218), Expect = 3e-48 Identities = 153/182 (84%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| |||||||||||||| || |||||||| | ||| |||||||||| |||||||| Sbjct 184 TTTACGACCCGAAGGCCTTCATCCCCCACGCGGCGTTGCTCCATCAGGCTTTCGCCCATT 125 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||| || |||| ||||||||| |||||||| ||||||||||||||| ||||||||||| Sbjct 124 GTGAAAGATTCGAAACTGCTGCCACCCGTAGGTGTCTGGACCGTGTCTAAGTTCCAGTGT 65 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||||||||||||| || | |||| |||| ||| ||||| | ||| Sbjct 64 GGCTGATCATCCTCTCAGACCAGCTACCCGTCTTTGCCTTGGTGAGCCGTTACCTCACCA 5 Query 185 AC 186 || Sbjct 4 AC 3 >seq7305 Length=327 Score = 163 bits (180), Expect = 7e-38 Identities = 108/120 (90%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||| |||| ||||||||| ||| |||||||||||||| ||||||||||||||||| Sbjct 208 CTTTACGACCCTAAGGCCTTCATCACTCACGCGGCATGGCTAGATCAGGCTTGCGCCCAT 267 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| || |||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 268 TGTCTAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 327 >seq1165 Length=359 Score = 125 bits (138), Expect = 2e-26 Identities = 190/271 (70%), Gaps = 32/271 (12%) Strand=Plus/Plus Query 144 CCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGG 203 ||||||| ||||||||| || |||| ||| ||||| | ||||||| ||||||| | || Sbjct 1 CCAGCTAAGGATCGTCGGCTTGGTGCGCCTTTACCACACCAACTACCTAATCCTACGCGG 60 Query 204 GTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGT 263 | |||||| | || | || ||||||| ||| || | | || |||| Sbjct 61 GCTCATCCCTCGGCGATA------AA--------TCTTTGGACTTACGTCATCATCCGGT 106 Query 264 ATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCA 323 |||||| |||||||| ||||| || ||| ||||| |||||| | |||| || Sbjct 107 ATTAGCAGTCGTTTCCAACTGTTATTCCGAACCAAGGGGCAGATTCCCACGCGTTACGCA 166 Query 324 CCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATG 383 ||||| ||||||| | || | |||| |||| |||||||||||||| Sbjct 167 CCCGTGCGCCACTA-------AGGCCG-AAGC--CTTC--------GTTCGACTTGCATG 208 Query 384 TGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||| ||||||||||||||| |||||| Sbjct 209 TGTTAGGCATGCCGCCAGCGTTCATTCTGAG 239 >seq46632 Length=218 Score = 82.4 bits (90), Expect = 2e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 126 GCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAA 185 |||| ||||||||||| |||||||| |||||| | || ||| |||||||||||| |||| Sbjct 216 GCTGATCATCCTCTCAAACCAGCTATAGATCGTAGACTTGGTAGGCCATTACCCCACCAA 157 Query 186 CTAGCTAATC 195 ||| |||||| Sbjct 156 CTATCTAATC 147 >seq28214 Length=256 Score = 78.8 bits (86), Expect = 2e-12 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 317 TTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGAC 376 |||| ||||||| |||| |||||| | | |||||||| || ||||||| ||||| Sbjct 176 TTACGCACCCGTGCGCCGGTCGTCATCAATTAAGCAAGCTCAATCATGTTACCCCTCGAC 235 Query 377 TTGCATGTGTTAGGCCTGCCG 397 ||||||||||||||||||||| Sbjct 236 TTGCATGTGTTAGGCCTGCCG 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221065725952