Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq7305 280 4e-73 seq92352 232 2e-58 seq33726 223 1e-55 seq94135 105 2e-20 seq104849 95.1 4e-17 seq95536 80.6 8e-13 >seq7305 Length=327 Score = 280 bits (310), Expect = 4e-73 Identities = 221/262 (84%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 239 CATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACA 298 || ||| |||||||||||| ||| |||||||||||||||||||||||||||| || ||| Sbjct 327 CACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATCTTAGACA 268 Query 299 ATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAG 358 |||||| ||||||||| ||| | |||||||||| |||||||||||| ||||||||||| Sbjct 267 ATGGGCGCAAGCCTGATCTAGCCATGCCGCGTGAGTGATGAAGGCCTTAGGGTCGTAAAG 208 Query 359 CTCTGTC-CTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTG 417 |||| || || ||| ||||||||| |||| || | ||| |||||||||||| |||| Sbjct 207 CTCTTTCAGCCAGGGATGATAATGACAGTACCTGGAAAAGAAACCCCGGCTAACTCCGTG 148 Query 418 CCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGG 477 |||||||||||||||||||| |||||| ||||||| | |||||||||| |||||||||| Sbjct 147 CCAGCAGCCGCGGTAATACGGAGGGGGTTAGCGTTGTTCGGAATTACT-GGGCGTAAAGC 89 Query 478 GTGCGTAGGTGGTTTCTTAAGT 499 | |||||| || || ||||| Sbjct 88 GCACGTAGGCGGATTAGTAAGT 67 >seq92352 Length=561 Score = 232 bits (256), Expect = 2e-58 Identities = 273/363 (75%), Gaps = 21/363 (6%) Strand=Plus/Minus Query 10 CTCTTCGGAGAAGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCC---CTGTACA 66 ||||| | || ||| |||||||||||||||||||||| || || || || |||| Sbjct 419 CTCTTTGCTGACGAGTGGCGGACGGGTGAGTAACGCGTAGG-AATCTACCTATCTGTGGG 361 Query 67 CACGGATAACATACCGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAG 126 ||||| | | |||| | | | |||||| ||||||| ||| || || || Sbjct 360 ---GGATACCGTTTGGAAACGAACGTTAATACCGCATAATAT-CTT----CGGAT--TAA 311 Query 127 AAGTATCAAAGCTCCGGCGGTACAGGATAGA----CCCGCGTCTGATTAGCTAGTTGGTA 182 |||| | ||| || | ||||||| || |||| |||||||| |||||| Sbjct 310 AAGTGGC---GCTTGCGCTGCTGCGGATAGATGAGCCTGCGTTAGATTAGCTTGTTGGTG 254 Query 183 AGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATT 242 ||||| ||| ||||||||| ||||| |||| || ||||||| ||||| |||||||| Sbjct 253 GGGTAAAGGCCTACCAAGGCTGCGATCTATAGCTGATTTGAGAGGATGATCAGCCACATT 194 Query 243 GGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGG 302 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 193 GGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGG 134 Query 303 GCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCT 362 | || |||||| |||| | |||||||| | || |||||| | |||| ||||||| || Sbjct 133 GGGCAACCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGGCTCTAGGGTTGTAAAGCACT 74 Query 363 GTC 365 || Sbjct 73 TTC 71 >seq33726 Length=242 Score = 223 bits (246), Expect = 1e-55 Identities = 168/198 (85%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 176 GTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGG 235 |||||| ||||||||||| |||||||| | || ||||| | |||||||| ||||| | Sbjct 3 GTTGGTGAGGTAACGGCTCACCAAGGCAAAGACGGGTAGCTGGTCTGAGAGGATGATCAG 62 Query 236 CCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGC 295 ||||| ||||||| |||||||||||| || |||||||| ||||||||| |||| || | Sbjct 63 CCACACTGGAACTTAGACACGGTCCAGACACCTACGGGTGGCAGCAGTTTCGAATCTTTC 122 Query 296 ACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTA 355 ||||||||| ||||||||||| |||||||||||||| | ||||||||||||||||||||| Sbjct 123 ACAATGGGCGAAAGCCTGATGGAGCAACGCCGCGTGGGGGATGAAGGCCTTCGGGTCGTA 182 Query 356 AAGCTCTGTCCTCAAGGA 373 || | ||||| |||||| Sbjct 183 AACCCCTGTCACCAAGGA 200 >seq94135 Length=527 Score = 105 bits (116), Expect = 2e-20 Identities = 86/103 (83%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| |||||||||| |||||||||||||||||||||||| |||| || ||||||||||| Sbjct 403 AAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCG 344 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | ||| |||||||| || ||| || | |||||| Sbjct 343 GAATCA-TTGGGTTTAAAGGGTCCGCAGGCGGACTTATAAGTC 302 >seq104849 Length=397 Score = 95.1 bits (104), Expect = 4e-17 Identities = 80/97 (82%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||||||| ||| | ||||||||||||||| | Sbjct 397 CGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGAATCA 338 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | ||| |||||||| |||||| || ||||||| Sbjct 337 -TTGGGTTTAAAGGGTCCGTAGGCGGGCCATTAAGTC 302 >seq95536 Length=505 Score = 80.6 bits (88), Expect = 8e-13 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 ||||||||||||||| |||||| |||| ||||||||||||||| |||| | |||||| Sbjct 434 GATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGCGACGATCTCTAGCTGGTTTGAGAG 493 Query 227 GGTGATCGGCCA 238 | ||||| |||| Sbjct 494 GATGATCAGCCA 505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1495965339648