Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq3379 318 1e-84 seq104849 302 1e-79 seq94135 257 4e-66 seq59121 205 2e-50 seq57215 188 2e-45 seq7305 168 2e-39 >seq3379 Length=347 Score = 318 bits (352), Expect = 1e-84 Identities = 272/335 (81%), Gaps = 2/335 (1%) Strand=Plus/Plus Query 76 TTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTC 135 |||||||||||||||||| ||||||||| | ||||||||| ||||||| | | ||||| Sbjct 1 TTACTGGGCGTAAAGGGTCTGTAGGTGGTATAGTAAGTCAGATGTGAAAGCCCAGGGCTC 60 Query 136 AACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCC 195 |||| || ||||| ||||| ||||| ||||||| || || || | | |||||| | Sbjct 61 AACCTTGGAACTGCATTTGATACTGCTAAACTAGAGTATAGTAGAGGAATGGGGAATTTC 120 Query 196 TAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCT 255 | |||||||||||||||||||||| || || |||||||||| |||||||||| | | || Sbjct 121 TGGTGTAGCGGTGAAATGCGTAGAGATCAGAAGGAACACCAATGGCGAAGGCAACATTCT 180 Query 256 GGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGG 315 ||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 181 GGACTAATACTGACACTGAGGGACGAAAGCGTGGGGATCAAACAGGATTAGATACCCTGG 240 Query 316 TAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGG--GCGCATAAGTGCTCCGGTGCC 373 |||||||||| ||||||||||| |||||| ||| ||| | ||| | || ||| | Sbjct 241 TAGTCCACGCTGTAAACGATGAGTACTAGCTGTTGGGTTCGGTGTAAAGGATCTAGTGGC 300 Query 374 GCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||||| ||||| |||||| ||| |||||||| || Sbjct 301 GCAGCTAACGCGTTAAGTACTCCGCCTGGGGACTA 335 >seq104849 Length=397 Score = 302 bits (334), Expect = 1e-79 Identities = 302/390 (77%), Gaps = 5/390 (1%) Strand=Plus/Minus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| |||||||||||||||||||||||| ||| | ||||||||||||||| | Sbjct 397 CGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGAATCA 338 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 |||| |||||||| |||||| || ||||||||| |||||||| || |||||||| Sbjct 337 TTGGGTTTAAAGGGTCCGTAGGCGGGCCATTAAGTCAGGGGTGAAAGTCTGCGGCTCAAC 278 Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAG 198 | | | ||| |||| |||| || || |||| || | | || | |||| ||| Sbjct 277 CGTAGAATTGCCCTTGATACTGGTGGTCTTGAGTTATGGTGAAGTAACTAGAATATGTAG 218 Query 199 TGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGA 258 |||||||||||||||| ||||||||| ||| ||| | |||||||| | || || | Sbjct 217 TGTAGCGGTGAAATGCATAGATATTACATAGAATACCGATTGCGAAGGCAGGTTACT-AA 159 Query 259 CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 318 | |||||| |||| | |||||||||||||||| ||||||||||||||||||||||| Sbjct 158 CATATACTGACGCTGATGGACGAAAGCGTGGGGAGCGAACAGGATTAGATACCCTGGTAG 99 Query 319 TCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGCCGCAGC 378 |||||||||||||||||| ||||||| |||| || ||| | || || | | ||| Sbjct 98 TCCACGCCGTAAACGATGGATACTAGCTGTCCGGATGCAAATCTG----GGCGGCCAAGC 43 Query 379 AAACGCAATAAGTATTCCACCTGGGGAGTA 408 || | |||||||| |||||||||||||| Sbjct 42 GAAAGTGATAAGTATCCCACCTGGGGAGTA 13 >seq94135 Length=527 Score = 257 bits (284), Expect = 4e-66 Identities = 299/398 (75%), Gaps = 8/398 (2%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||||| |||| || ||||||||||| Sbjct 403 AAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCG 344 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| | |||| |||||||| || ||| || | |||||||| ||||||| | | Sbjct 343 GAATCATTGGGTTTAAAGGGTCCGCAGGCGGACTTATAAGTCAGTGGTGAAATCTCACAG 284 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 || ||| | ||||| |||| |||| | | || || | | | | | | ||||| Sbjct 283 CTTAACTGTGAAACTGCCATTGATACTGTAAGTCTTGAATTCGGTCGAAGTGGGCGGAAT 224 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | |||||||||||||||| ||||||| | ||||||| | |||||||| ||| Sbjct 223 ATGTCATGTAGCGGTGAAATGCTTAGATATGACATAGAACACCGATAGCGAAGGCAGCTC 164 Query 253 GCT-GGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 || || ||| | |||| || ||| |||||||||||||||| |||||||||||||||| Sbjct 163 ACTAGGCCTGGAT-TGACGCTCAGGGACGAAAGCGTGGGGAGCGAACAGGATTAGATACC 105 Query 312 CTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATA-AGTGCTCCGGT 370 ||||||||||||||||||||| || |||||| | | || | | ||| ||| || Sbjct 104 CTGGTAGTCCACGCCGTAAACTATCAATACTCGTTTTCAGCG-ATATACAGT----TGGA 50 Query 371 GCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | ||| || | ||||||||| ||||||||||||| Sbjct 49 GACTAAGCGAAAGTGATAAGTATTGCACCTGGGGAGTA 12 >seq59121 Length=200 Score = 205 bits (226), Expect = 2e-50 Identities = 164/198 (83%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 54 AGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 ||||||| |||||| | |||||||||||||||||||| | ||||||| || | |||||| Sbjct 198 AGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCGCGTAGGCGGGTCTTTAAGT 139 Query 114 CAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTG 173 ||||||||||| || ||||||| || | ||||| ||||| |||| || || |||| Sbjct 138 CAGAGGTGAAATCCTGGAGCTCAACTCCAGAACTGCCTTTGATACTGGAGATCTTGAGTC 79 Query 174 CAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACA 233 | | || || ||||||||||| ||||||| |||||||| |||||||||| ||| ||||| Sbjct 78 CGGAAGAGGTTAGTGGAATTCCCAGTGTAGAGGTGAAATTCGTAGATATTGGGAAGAACA 19 Query 234 CCAGTGGCGAAGGCGGCT 251 |||||||||||||||||| Sbjct 18 CCAGTGGCGAAGGCGGCT 1 >seq57215 Length=202 Score = 188 bits (208), Expect = 2e-45 Identities = 160/196 (82%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 54 AGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 |||| ||||||||| | |||||||||||||||||||| | ||||||| || | | ||| Sbjct 200 AGGGAGCTAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCGCGTAGGCGGACTGATCAGT 141 Query 114 CAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTG 173 ||| ||||||| | ||||||||||||| ||||| ||||| |||| | ||||||| Sbjct 140 CAGGGGTGAAATCCCGGGGCTCAACCCCGGAACTGCCTTTGATACTGTCAGTCTAGAGTC 81 Query 174 CAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAG-GAGGAAC 232 | | || || | ||||| ||||||||||| |||||||| |||||||||||| || |||| Sbjct 80 CGGAAGAGGTGAATGGAACTCCTAGTGTAGAGGTGAAATTCGTAGATATTAGTGAAGAAC 21 Query 233 ACCAGTGGCGAAGGCG 248 |||||||||||||||| Sbjct 20 ACCAGTGGCGAAGGCG 5 >seq7305 Length=327 Score = 168 bits (186), Expect = 2e-39 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 12 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 71 ||| |||||||||||| |||||||||||||||||||||||| |||||| ||||||| | | Sbjct 168 GAAACCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGGGTTAGCGTTGTTC 109 Query 72 GGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATG 131 ||||||||||||||||||| | |||||| || || ||||| |||||||||| | | | Sbjct 108 GGAATTACTGGGCGTAAAGCGCACGTAGGCGGATTAGTAAGTTAGAGGTGAAATCCCAGG 49 Query 132 GCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGT 172 ||||||||| || ||||| ||| | ||||| | || |||| Sbjct 48 GCTCAACCCTGGAACTGCCTTTAATACTGCTAGTCTTGAGT 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201886683136