Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq86356 183 6e-44 >seq86356 Length=715 Score = 183 bits (202), Expect = 6e-44 Identities = 208/276 (75%), Gaps = 20/276 (7%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||| | | ||| | | ||||||| ||||||||||||||||||||| Sbjct 535 CTTCTTAGAGGGACGTTGTGTGCAACCACAAGGAAGTT-GAGGCAATAACAGGTCTGTGA 477 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG-----TTC 186 ||||||||||||| |||||||||||||| |||||||||| | ||||||| | | Sbjct 476 TGCCCTTAGATGTCCTGGGCCGCACGCGTGCTACACTGATACGTACAACGAGGTATATGC 417 Query 187 AT-----CACCTTGGC----CGGAA----GGTCTGGGTAATCTTGTTAAACTC-TGTCGT 232 || || ||| || | ||| | | |||||| | ||| | | |||| Sbjct 416 ATTTATGCATCTTTGCTGCTCCGAAATAGACACAGCTAAATCTTCTAAAATACGTATCGT 357 Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 |||| ||||||| | ||| |||||| | |||| || | ||||| |||||||||||| || Sbjct 356 GCTGCGGATAGATCGTTGAAATTATGGATCTTGAAGGTGGAATTCCTAGTAAGCGCAGGT 297 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| | ||||||||||||||||||||||||||| Sbjct 296 CATCAACCTGCGTTGATTACGTCCCTGCCCTTTGTA 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946166112256