Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq106932 327 4e-87 >seq106932 Length=382 Score = 327 bits (362), Expect = 4e-87 Identities = 283/348 (81%), Gaps = 7/348 (2%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTAT 247 ||||||| || ||||| | | |||||||||||||| |||||| | |||||||| ||| Sbjct 374 TAAGTAAGAAGACGATGAAAGCAGTGGTATTTCACTGGCGCCGGA---GCTCCCACCTAT 318 Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCT 307 |||||| || || ||| ||||||| ||||||| |||||| ||||||||||||||||||| Sbjct 317 TCTACATCTTCCATGTCTTTTCACACAGTCGGATTAGAGTAAAGCTCAACAGGGTCTTCT 258 Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 ||||||||||| | |||||| ||||||||||||||| ||||||||||||| |||||||| Sbjct 257 TTCCCCGCTGACTAGGCCAAGTCCGTTCCCTTGGCTGCGGTTTCGCTAGATGGTAGATAG 198 Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTT 427 ||||||| |||| |||| || | |||||||| ||||| || ||| |||||||||||||| Sbjct 197 GGACAGTAGGAACCTCGAAAACCAATTCATGCACGTCATTAGTTATATGACGAGGCATTT 138 Query 428 GGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT--GGTTGAATTTC 485 ||||||||||| ||||||||||||||||| || ||||| |||| | ||| | || Sbjct 137 GGCTACCTTAAAAGAGTCATAGTTACTCCTGCTGTTTAGAATGGCTTAAGCTTG--TCTC 80 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || |||||| | ||||| ||| | |||||||| ||||||| Sbjct 79 CAAACATTGACAAGAATTCCACTGAGCATGACTCACATTGTGTCAACA 32 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633415146496