Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq102405 210 7e-52 seq10948 208 3e-51 seq101888 199 1e-48 seq10715 194 6e-47 seq497 187 8e-45 seq17965 159 1e-36 seq7301 141 3e-31 seq86800 100 1e-18 seq59157 82.4 3e-13 >seq102405 Length=420 Score = 210 bits (232), Expect = 7e-52 Identities = 297/410 (72%), Gaps = 8/410 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACT--CACCACCTGATTG 58 ||||| ||| ||||||||||||||| |||| ||| || |||| || || |||| Sbjct 406 TCGACCTGTCCGTCTCGCAGTCAAGCAACCTTATGCCATTGCACTATCAGTAC--GATTT 349 Query 59 CCAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCC 118 || ||| | ||| ||||| | | |||||||||| ||||||||| | ||||||| Sbjct 348 CCGACCGTACCTAGGTTACCTTCGCACTCCTCCGTTACTCTTTGGGAGGAGA-CCGCCCC 290 Query 119 AGTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATA-TC 177 ||| ||||| ||||||| ||| |||||| | |||||| |||| || |||||||| || Sbjct 289 AGTCAAACTGCCCACCATACACGGTCCCCGATCCAGATTATGGACCTAGGTTAGAACCTC 230 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCAT 237 || || |||| |||||||||||| | ||||||| || |||||||| | ||| Sbjct 229 AACAACA-TCAGGGTGGTATTTCAAGGATGACTCCATAAGAACTAGCGTCCCTATCTCAA 171 Query 238 AGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGG- 296 ||||||||||||||||||||||| | | || ||||| |||||| ||| |||| Sbjct 170 CGTCTCCCACCTATCCTACACAAATCTTGTCAAAGTCCAATGTAAAGCTACAGTAAAGGT 111 Query 297 TCCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCA 356 || ||||||||| |||| |||||| | | ||||||| || ||| ||| ||| Sbjct 110 TCATGGGGTCTTTCCGTCTAGCCGCGGGTAGATTGCATCTTCACAACCACTTCAACTTCG 51 Query 357 CCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGG 406 | | | | | | ||||||| || |||||||||||||||||| || Sbjct 50 CTGAGTCCCTAGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCGGG 1 >seq10948 Length=311 Score = 208 bits (230), Expect = 3e-51 Identities = 234/311 (75%), Gaps = 14/311 (5%) Strand=Plus/Plus Query 6 TTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCA 65 |||| ||||| ||||||||| ||||| ||| |||||||| ||| |||| |||| | Sbjct 1 TTGTCGGTCTCTCAGTCAAGCACCCTTATGCCATTACACTCTACACACGATTACCAAACG 60 Query 66 GGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAA 125 | |||||| |||||| || ||||||||||| ||| ||| ||| ||| ||||||| ||| Sbjct 61 TGTTGAGGGTACCTTTAGGAGCCTCCGTTACTCTTTTGGA-GGCGACCACCCCAGTCAAA 119 Query 126 CTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGG 185 |||||||||| || |||||||| | ||| |||||| | | || Sbjct 120 CTACCCACCACACAATGTCCCCA------TTAATG------GGTTAGGCACCAGATAATT 167 Query 186 TCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCC 245 | || |||||||||||||||||||| | | || |||||| || |||||| |||||||| Sbjct 168 TAAGGGTGGTATTTCAACAACGACTACTCTACGCCTAGCGACGCAGCATCAAAGTCTCCC 227 Query 246 ACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGG-TCCCGGGG 304 |||||||||||||| | ||| ||| ||||| |||||||||| |||| || ||||| Sbjct 228 ACCTATCCTACACATAAATTACCCAATACCAATGTGAAGCTATAGTAAAGGTTCACGGGG 287 Query 305 TCTTTTCGTCC 315 ||||| ||||| Sbjct 288 TCTTTCCGTCC 298 >seq101888 Length=425 Score = 199 bits (220), Expect = 1e-48 Identities = 297/412 (72%), Gaps = 11/412 (3%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCAC-CTGATTGC 59 |||||||||| ||||| |||| |||||||||| | | || ||| | |||||||| Sbjct 19 TCGACTTGTAGGTCTCACAGTAAAGCTCCCTTATACCAATATGCTCTATAGTCTGATTGC 78 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 ||||||| | ||||||||||| | |||||||||| ||| ||||| | |||||||| Sbjct 79 CAACCAGACCGAGGGAACCTTCGTAATCCTCCGTTACTCTTTAGGAGGATA-CCGCCCCA 137 Query 120 GTTAAACT-ACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCC 178 || ||||| |||| | | ||||||||| | |||||| |||| ||||||||| | Sbjct 138 GTAAAACTGACCCGCTA-ACACTGTCCCACAACCAGATAATGGTGTGTGGTTAGATACCT 196 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAAC-CACT--AGCGTGGCCGCATC 235 | | || ||||||||||| ||||||||||||||| | || ||| ||||| || Sbjct 197 AACAAACATAGGGTGGTATTTCACCAACGACTCCACAACGCCCTGAAGC---GCCGCTTC 253 Query 236 ATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295 ||||||||||||||||||| ||| | | | | |||||| || || ||| ||| Sbjct 254 GAAGTCTCCCACCTATCCTACGCAATGAAAATCAAGTACCAATATCAGCTTACAGTAAAG 313 Query 296 GT-CCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 || | |||||||| |||||||| ||| | | ||||||| || ||| |||||| Sbjct 314 GTGCAAAGGGTCTTTCCGTCCTGCTGCGGGTACGCGGCATCTTGACCGCGACTACAATTT 373 Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGG 406 ||| | || | | ||||||| | | ||||||| | |||||||| || Sbjct 374 CACTGAGCATCTCTCCGAGACAGTGCGCAACTCGTTACACGATTCGTGCGGG 425 >seq10715 Length=311 Score = 194 bits (214), Expect = 6e-47 Identities = 234/312 (75%), Gaps = 16/312 (5%) Strand=Plus/Plus Query 7 TGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAG 66 |||| ||||| ||||||||| ||||||||| || ||||| ||| ||||||||||| Sbjct 1 TGTATGTCTCTCAGTCAAGCGCCCTTGTGCCATTGCACTCTGCACACGATTGCCAACCGT 60 Query 67 GCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAAC 126 |||||| |||||| | ||||||||||| ||| ||| ||| ||| ||||||| |||| Sbjct 61 ATTGAGGGCACCTTTAGAAGCCTCCGTTACTCTTTTGGA-GGCGACCACCCCAGTCAAAC 119 Query 127 TACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGT 186 ||||||||| ||||||||| | || || | || ||||| || || Sbjct 120 TACCCACCACGCACTGTCCTC--CC---ATTAGGG-----AGTTAG--GCCCCGGACAAA 167 Query 187 CAGAG--TGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCC 244 || || |||||||||||||| |||||||| || || ||| || || ||| ||||||| Sbjct 168 CAAAGGCTGGTATTTCAACAATGACTCCACCACACCTGGCGATGCAGCTTCAAAGTCTCC 227 Query 245 CACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT-CCCGGG 303 || |||||||||||| || || | |||||| |||||||||| ||||| | |||| Sbjct 228 CAGCTATCCTACACATTGGTTGCCCAAGGTCAATACGAAGCTATAGTAAAGGTGCACGGG 287 Query 304 GTCTTTTCGTCC 315 |||||||||||| Sbjct 288 GTCTTTTCGTCC 299 >seq497 Length=364 Score = 187 bits (206), Expect = 8e-45 Identities = 260/359 (72%), Gaps = 8/359 (2%) Strand=Plus/Plus Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62 ||| ||| ||||||||||||||| | ||| ||| ||||||| |||| |||| || | Sbjct 1 GACATGTCCGTCTCGCAGTCAAGCACTCTTTTGCCTTTACACTAACCATACGATTTCCGA 60 Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122 || | || | ||| | | || |||||||||| ||| ||||| | |||||||||| Sbjct 61 CCGTATTTAGAGTACCATAGCGCTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAGTC 119 Query 123 AAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCC--AC 180 ||||||||||||| || ||| ||| | || ||| | || || |||||| ||| || Sbjct 120 AAACTACCCACCATACATTGTTCCCGATCCCGATAAGGGACCTGGGTTAGGACTCCGAAC 179 Query 181 -TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 ||| ||| |||||||||||| | | |||||| |||||||| ||| ||| || Sbjct 180 ATAC---CAGGGTGGTATTTCAAGGATGGCTCCACGCAAACTAGCGTTCACGCTTCAAAG 236 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT-C 298 ||||||||||||||||||||| | | || ||||| | ||||| |||| ||||| | Sbjct 237 CCTCCCACCTATCCTACACAAATAGGTTCAAAGTCCAATGCAAAGCTGTAGTAAAGGTGC 296 Query 299 CCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 |||||||||| |||| ||||| | | ||||||| || | | ||||||||| Sbjct 297 ACGGGGTCTTTCCGTCTAACCGCGGGTACACTGCATCTTCACAGCAAATTCAATTTCAC 355 >seq17965 Length=285 Score = 159 bits (176), Expect = 1e-36 Identities = 193/260 (74%), Gaps = 7/260 (3%) Strand=Plus/Plus Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62 ||| ||| |||||||||| ||||| ||| ||| || |||| ||| |||| || | Sbjct 1 GACGTGTCTGTCTCGCAGTTAAGCTGGCTTATGCCATTGCACTAACCGTATGATGTCCGA 60 Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122 ||| || || |||||| | || |||||||||| ||| ||||| | |||||||||| Sbjct 61 CCATACTTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAGTC 119 Query 123 AAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC-- 180 |||||||||||||| || ||||||||| || ||| | || || |||||||| ||| Sbjct 120 AAACTACCCACCAGACAGTGTCCCCAAGCCCGATAAGGGCCCTAGGTTAGAACATCACGC 179 Query 181 -TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 ||| || |||||||||||| |||||||| || |||||| | ||| || Sbjct 180 ATAC---AAGGGTGGTATTTCAAGGTTGACTCCACCACATCTAGCGACATGGTTTCAAAG 236 Query 240 TCTCCCACCTATCCTACACA 259 |||||||||||||||||||| Sbjct 237 TCTCCCACCTATCCTACACA 256 >seq7301 Length=320 Score = 141 bits (156), Expect = 3e-31 Identities = 215/303 (71%), Gaps = 5/303 (2%) Strand=Plus/Minus Query 54 GATTGCCAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACC 113 |||| || ||| ||||| |||||| | ||||||||||||| ||| || ||| ||| Sbjct 300 GATTTCCGACCGCTCTGAGCCAACCTTCGCGCGCCTCCGTTACGTTTAGGA--GGCGACC 243 Query 114 GCCCCAGTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGA 173 |||||||| ||||||||| ||| || ||||| | || ||| | || || ||||||| Sbjct 242 GCCCCAGTCAAACTACCCGCCACACAGGGTCCCGGATCCGGATAACGGACCGCGGTTAGA 183 Query 174 TATCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCA 233 ||| | | | || ||||||| |||| | |||||| | |||||||| | Sbjct 182 CATCAAACAGAATTAGGGTGGTATCTCAAGGGTGGCTCCACCAAGACTAGCGTCTTGGTT 123 Query 234 TCATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 ||| || | ||||||||||| ||| | ||| ||||||| | ||||| |||| | Sbjct 122 TCAAAGCCCACCACCTATCCTGCAC--ATGTGACCTAATGCCAGTGTGAAGCTGTAGTAA 65 Query 294 AGGT-CCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 |||| | |||||||||| |||| ||||| ||| | ||||||| || | | | |||| Sbjct 64 AGGTGCACGGGGTCTTTCCGTCTAACCGCGGGAAGCCTGCATCTTGACAGGCAATTCAAT 5 Query 353 TTC 355 ||| Sbjct 4 TTC 2 >seq86800 Length=704 Score = 100 bits (110), Expect = 1e-18 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 ||||||| |||| ||||||||| |||||| |||||| || | ||| || ||| ||||| Sbjct 497 GAGACAGTAGGGCAGTCGTTACACCATTCATGCAGGACGACAATTAATCGCCAATGAATT 556 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 |||||||||||||| || | | ||| |||||||||||||||| || Sbjct 557 TCGCTACCTTAGGACCGTCAGGGATACAGCCGCCGTTTACTGGGGTTT 604 >seq59157 Length=200 Score = 82.4 bits (90), Expect = 3e-13 Identities = 112/155 (72%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 188 AGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCAC 247 || |||||||||||| |||||||| | |||||| | |||||||||||||| Sbjct 42 AGGGTGGTATTTCAAGGTCGACTCCAACAAATCTAGCGACTTGTCTTCATAGTCTCCCAC 101 Query 248 CTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGG-TCCCGGGGTC 306 |||||||||||| | | || ||| | | ||||| |||| |||| || ||||||| Sbjct 102 CTATCCTACACATAAATATTCAAAGTCCAGTGCAAAGCTGTAGTAAAGGTTCACGGGGTC 161 Query 307 TTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACT 341 ||| |||| ||||| | | |||||||| ||| Sbjct 162 TTTCCGTCTAACCGCGGGTACACAGCATCTTCACT 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1700541796352