Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq92352 179 8e-43 seq94135 141 2e-31 seq33726 122 2e-25 seq7305 104 5e-20 >seq92352 Length=561 Score = 179 bits (198), Expect = 8e-43 Identities = 178/229 (78%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 67 TTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTG 126 |||| ||||| | |||| ||||||| || |||| ||||| || ||||| | || Sbjct 57 TTTTCCTCCCTACTGAAAGTGCTTTACAACCC-TAGAGCCTTCTTCACACACGCGGCATG 115 Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 ||||| |||| | | |||||| |||||||||| |||||||||||||||||||||||| Sbjct 116 GCTGGATCAGGGTTGCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTT 175 Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGG 246 ||||||||||||||||||||||||| || | |||||||| | | |||| |||| || Sbjct 176 GGACCGTGTCTCAGTTCCAATGTGGCTGATCATCCTCTCAAATCAGCTATAGATCGCAGC 235 Query 247 CTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 || ||| |||| ||||||| || || | ||||| |||||| | |||| Sbjct 236 CTTGGTAGGCCTTTACCCCACCAACAAGCTAATCTAACGCAGGCTCATC 284 >seq94135 Length=527 Score = 141 bits (156), Expect = 2e-31 Identities = 123/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| ||||||||||| | ||||| || |||| |||||| Sbjct 375 GGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCATTTGCTACATTCAGGCTCGGACACGT 434 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || ||||||| | ||||||| ||||||| |||| |||||||||| |||| ||||| Sbjct 435 CCGAGAGTTTATTCACAAATAAAAGCAGTTTACGATCCATAGAACCTTCTTCCTGCACGC 494 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACC 153 | ||||||| ||||| | | ||||||| || Sbjct 495 GGCATGGCTGGGTCAGAGTTGCCTCCATTGCCC 527 >seq33726 Length=242 Score = 122 bits (134), Expect = 2e-25 Identities = 138/184 (75%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 88 GTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCA 147 |||||| | ||| || ||||||||| ||||| | | ||| |||| || ||| ||| Sbjct 185 GTTTACGACCCGAAGG-CCTTCATCCCCCACGCGGCGTTGCTCCATCAGGCTTTCGCCCA 127 Query 148 TTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAAT 207 ||| || |||| ||||||||| |||||||| || |||||||||||| ||||||| | Sbjct 126 TTGTGAAAGATTCGAAACTGCTGCCACCCGTAGGTGTCTGGACCGTGTCTAAGTTCCAGT 67 Query 208 GTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGC 267 |||| || | |||||||||| | ||| || || | | || |||| ||||||||| | | Sbjct 66 GTGGCTGATCATCCTCTCAGACCAGCTACCCGTCTTTGCCTTGGTGAGCCGTTACCTCAC 7 Query 268 CTAC 271 | || Sbjct 6 CAAC 3 >seq7305 Length=327 Score = 104 bits (114), Expect = 5e-20 Identities = 100/127 (79%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 ||||| ||||| | || || |||||||| |||||| | ||||| | |||| || Sbjct 202 AAAGAGCTTTACGACCCTAAGG-CCTTCATCACTCACGCGGCATGGCTAGATCAGGCTTG 260 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| | || ||||| |||||||||||||||||||||| ||| |||||||||||| Sbjct 261 CGCCCATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGT 320 Query 202 TCCAATG 208 ||| || Sbjct 321 CCCAGTG 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1067633383424