Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq49221 111 3e-22 seq90927 104 4e-20 seq4910 82.4 1e-13 >seq49221 Length=214 Score = 111 bits (122), Expect = 3e-22 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | | |||||| ||||||| ||||| || ||| | ||| | Sbjct 186 GTACGAGAGGAACCCCTGT-TTCAGAC-AATTGGTAAATGCGGTTGCTTGAAAAAGCAAT 129 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||||||||||||||||| ||| ||| ||||||||||||||||||| ||| |||||| Sbjct 128 GCCGCGAAGCTACCATCTGTTGGTTTAGGGCTGAACGCCTCTAAGTCCGAAACCATGC 71 >seq90927 Length=593 Score = 104 bits (114), Expect = 4e-20 Identities = 105/130 (81%), Gaps = 5/130 (4%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | | |||||| || |||||| | ||| ||||||| |||||||| Sbjct 474 GTACGAGAGGAACAGTTGG-TTCAGA-TATTTGGTTAATACGGTTGTCTGAACAGGCAGT 417 Query 61 GCCGCGAAG-CTACCATCTGC-TGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 | || |||| ||| |||||| | || |||||||||| ||||||||| ||||||||||| Sbjct 416 GTCGTGAAGACTATCATCTGTATCGAGTATGGCTGAAAGCCTCTAAGCCAGAATCCATG- 358 Query 119 CAGAACGGGG 128 | ||| |||| Sbjct 357 CTGAAAGGGG 348 >seq4910 Length=338 Score = 82.4 bits (90), Expect = 1e-13 Identities = 97/126 (77%), Gaps = 4/126 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||| | ||||||| | || | | |||| || | | Sbjct 219 GTACGAGAGGAACTCCTGA-TTCACA-TAATTGGCATA-GCTGTCGCCTGAAAAGACGAT 163 Query 61 GCCGCGAAGCTACCATCTGCT-GGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 || ||||||||| ||| |||| ||| |||| ||||||||||||||| |||||||| || Sbjct 162 GCAGCGAAGCTAACATGTGCTTGGAATATGCCTGAACGCCTCTAAGGCAGAATCCGCTCC 103 Query 120 AGAACG 125 |||||| Sbjct 102 AGAACG 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818333769728