Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq103561 437 3e-120 seq100937 221 4e-55 seq88034 179 1e-42 seq50244 176 1e-41 >seq103561 Length=409 Score = 437 bits (484), Expect = 3e-120 Identities = 326/378 (86%), Gaps = 4/378 (1%) Strand=Plus/Minus Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT 189 |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| Sbjct 409 CCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTGCGACCATGGTAAGCCACTAC 350 Query 190 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCAT 249 | |||||||||||||||||||||| |||||||||||||| |||||||| | ||| | ||| Sbjct 349 CTTACCATCGAAAGTTGATAGGGCGGAAATTTGAATGAATCATCGCCGCCGCAAAGGCAT 290 Query 250 GCGATTCGTTAAGTTATTATGAATCACCAAGGAGCC--CCGAAGGGCGTTGGTTTTTTAT 307 |||||||| |||||||||||||||||||| || | |||| | ||||| ||| Sbjct 289 GCGATTCGAAAAGTTATTATGAATCACCAA-AAGTCGGCCGAGGCCGGTTGGCACAGTAT 231 Query 308 CTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACC 367 |||||||||||| |||||| |||||||| |||| |||||||||||||||||||||||| Sbjct 230 CTAATAAATACATCCCTTCGCAAGTCGGGACTTTTCGCATGTATTAGCTCTAGAATTACC 171 Query 368 ACGGTTATCCATGTAGTAA-GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATT 426 ||||||||||| |||| || |||| ||||||||||| ||||| |||||||||||||||| Sbjct 170 ACGGTTATCCAAGTAGCAATTGTACCATCAAATAAACTATAACCGATTTAATGAGCCATT 111 Query 427 CGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486 | ||||||| | ||| | ||||||||||| | |||||||||||||||||||||||| Sbjct 110 CACAGTTTCGCAGTAAAAGTTGCTTATACTGGCATTTGCATGGCTTAATCTTTGAGACAA 51 Query 487 GCATATGACTACTGGCAG 504 |||||||||||||||||| Sbjct 50 GCATATGACTACTGGCAG 33 >seq100937 Length=432 Score = 221 bits (244), Expect = 4e-55 Identities = 272/361 (75%), Gaps = 18/361 (5%) Strand=Plus/Minus Query 155 CCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGG--G 212 ||||| || || ||| ||||||| | ||| || |||||||| ||| |||| || | Sbjct 431 CCCCGATAGCCCGTGAACCCATGGTTGTCCAATACACTACCATC--AAGCTGATGGGAAG 374 Query 213 CAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAA 272 |||||| |||||| ||| ||||| || || || || || |||||||| ||||| Sbjct 373 CAGAAACATGAATGGTTCATTGCCGGT---AGACCCAGCAATCCGATAAGTTATCATGAA 317 Query 273 TCACCA-AGGAGCCCCGAAGGGCG-TTGGTTTTTTATCTAATAAATACACCCCTTCCG-- 328 ||| | || || || || ||||||| ||||||||||||| ||||| Sbjct 316 TCATCTCAGTAGACCTTGCGGAATATTGGTTTGAAATCTAATAAATACTGAGGTTCCGTA 257 Query 329 AAGTCGGGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGT--A 385 ||||| | | | |||||||||||| |||||||||| |||||||||||| || | Sbjct 256 AAGTCCC--TCGTAACGCATGTATTAGCCCTAGAATTACTACGGTTATCCATTTAAACAA 199 Query 386 AGGTACTAT--CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATA 443 | || || ||||||||| ||||||| || ||||||||||||||||||||| ||||| Sbjct 198 ATGTTTTAATCCAAATAAACTATAACTGTTTGAATGAGCCATTCGCAGTTTCATTGTATG 139 Query 444 GATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 138 TAACCTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCGTATGACTACTGGCA 79 Query 504 G 504 | Sbjct 78 G 78 >seq88034 Length=666 Score = 179 bits (198), Expect = 1e-42 Identities = 138/161 (86%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 39 TCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCC 98 ||| ||||| || |||||||||||| | || ||||||| |||||| ||||||||||||| Sbjct 161 TCATTATTTCTT-TCACTACCTCCCTGAATCAGGATTGGATAATTTTCGCGCCTGCTGCC 103 Query 99 TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 |||| | || ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 102 TTCCGTAGAAGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCCCC 43 Query 159 GTTA-CCCGTTGATACCATGGTAGGCCACTATCCTACCATC 198 | || ||||| || ||||||| | ||| || |||||||| Sbjct 42 GATAGCCCGTGAATGCCATGGTTGTCCAATACACTACCATC 2 >seq50244 Length=213 Score = 176 bits (194), Expect = 1e-41 Identities = 165/206 (80%), Gaps = 8/206 (4%) Strand=Plus/Minus Query 187 TATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGC 246 || ||||||||||| || |||||||||||||| |||||||| |||||||||| ||| | Sbjct 212 TACCCTACCATCGACAGCTGATAGGGCAGAAACTTGAATGATTCATCGCCGGCCGAAGCC 153 Query 247 CATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGCCCCGAA----GGGCGTTGGTT 301 ||||||||| | ||||||||||| |||||| | | | ||| || |||| | Sbjct 152 ACTGCGATTCGCTTAGTTATTATGACTCACCACAACACCAGGGAAAACCCTGCATTGG-T 94 Query 302 TTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359 || ||||||||||||||| ||| ||| |||| ||| ||| | |||||||||||||||| Sbjct 93 TTCTATCTAATAAATACAGCCCGTCCAAAAAGTTGGGCTTTGTTGCATGTATTAGCTCTA 34 Query 360 GAATTACCACGGTTATCCATGTAGTA 385 ||||||| ||||||||||| |||||| Sbjct 33 GAATTACTACGGTTATCCAAGTAGTA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508751368192