Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq60379 188 2e-43 seq19780 116 1e-21 seq59718 86.0 2e-12 seq77519 84.2 6e-12 >seq60379 Length=4852 Score = 188 bits (208), Expect = 2e-43 Identities = 376/557 (68%), Gaps = 0/557 (0%) Strand=Plus/Minus Query 37688 GAAAACGGCGTCGAAAAAGAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGC 37747 ||||||||| ||| || | || || || || || || | || || || |||| Sbjct 2026 GAAAACGGCACCGATAAGGGCGATCGGACCGGTACAGGTACACGTTCTGTTTTTGGCCAT 1967 Query 37748 CAGCTCCGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATC 37807 ||| | || ||| | || || || ||||||||||||||||||||||| | ||| | Sbjct 1966 CAGATGCGTTTCGATTTGAGCGAAGGTTTTCCGCTCGTGACAACGAAAAAGCTTCATTTG 1907 Query 37808 CGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTG 37867 || || || || || || | ||||| | |||||||| || | ||| | Sbjct 1906 CGGTCGATTATCATCGAGCTTTTATGGTTCCTGCGCGGCGATACCAATATTGGCTGGCTC 1847 Query 37868 CAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCG 37927 | || ||||||||| ||||||||||||| ||||| || ||||| |||||||| || ||| Sbjct 1846 AAAGAAAATGGCGTGTCGATTTGGGATGATTGGGCCGATGAAAATGGCGATCTTGGACCG 1787 Query 37928 ATTTACGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATC 37987 | ||||| || |||||||| ||| | |||| || | || |||| ||||| Sbjct 1786 GTATACGGATATCAGTGGCGCTCATGGCCAGCGCCAGATGGAACAAGTGTCGATCAGATT 1727 Query 37988 GCATGGGTTGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCT 38047 | | |||| || | ||||| |||||| |||| ||||| | | ||||| ||| Sbjct 1726 GAAAAACTTGTTGATGGTATCAAGAACAATCCGAATTCGCGCCGCCACATTGTGAGTGCT 1667 Query 38048 TGGAATGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTC 38107 ||||| || | ||||||||| ||||||| ||||||| |||||||| Sbjct 1666 TGGAACCCTGCTCTGGTAGACGAGATGGCTTTGCCGCCATGTCATTGTCTGTTTCAGTTT 1607 Query 38108 TATGTCGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTA 38167 |||||||| ||||| | | |||||| | | ||||| || | |||| |||||| Sbjct 1606 TATGTCGCGGACGGCAAGCTTTCATGCCAGCTCTATCAGCGTTCGGCGGATATCTTTTTA 1547 Query 38168 GGGTTGCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCATATGGTAGCCCAACAATGC 38227 || |||| || || |||||| ||| ||||| | ||||| ||| | || || || Sbjct 1546 GGTGTGCCATTCAATATCGCGTCCTATGCGCTTCTTACGCACATGATTGCACAGGTGTGT 1487 Query 38228 GACTTGGATGTCGGTGA 38244 ||| | || || ||||| Sbjct 1486 GACCTTGAGGTGGGTGA 1470 >seq19780 Length=279 Score = 116 bits (128), Expect = 1e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 37785 TGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAG 37844 |||||||||| ||| |||| | ||||||||||| |||| |||| ||||| | | Sbjct 274 TGACAACGAAGAAACTGCACCTTCGCTCCATCATCATTGAATTGCTGTGGTTCCTGCGCG 215 Query 37845 GCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGG 37904 ||||||| ||| || | || | ||||| |||||||| ||| |||| ||||| | Sbjct 214 GCGATACCAACATCAAGTGGCTGAATGAGAACAAGGTGACGATCTGGAATGAATGGGCAG 155 Query 37905 ACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCGTGGAAGGGAGCAG 37964 | || ||||| |||||||||||| | || || || ||||| || ||| || | | Sbjct 154 ATGAGAACGGTGATCTCGGCCCGGTCTATGGTCACCAGTGGCGGTCATGGCCGGCACGTG 95 Query 37965 ACGGGAAAACCATCGACCAGAT 37986 |||| | ||||||||||||||| Sbjct 94 ACGGCACAACCATCGACCAGAT 73 >seq59718 Length=6799 Score = 86.0 bits (94), Expect = 2e-12 Identities = 204/306 (67%), Gaps = 2/306 (1%) Strand=Plus/Minus Query 37650 TAATGAAACAATATTTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAA-AAAGAA 37708 ||||||| |||||| ||||| | || |||| | || ||||| |||| |||||| Sbjct 2313 TAATGAAGCAATATCACGACTTATTACAGCACATTCTGGACAACGGAA-CGAACAAAGAA 2255 Query 37709 GACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAA 37768 || || || || || || ||||| || ||| ||| | || || | || | Sbjct 2254 GATCGCACAGGAACAGGTACTACATCGGTTTTTGGCTACCAAATGCGTTTTGATTTGAAC 2195 Query 37769 GATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTG 37828 || || |||||| | ||||||||||| ||||| | | || || ||| | ||||| Sbjct 2194 GAAGGTTTTCCGTGTATCACAACGAAAAAGTTGCACTTAAGATCGATTATTCACGAACTC 2135 Query 37829 CTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATT 37888 | ||||| || ||||||| || ||| || ||| | | ||| | ||| | ||| Sbjct 2134 TTATGGTTCTTGCAAGGCGACACCAACATCAAGTATCTAAAAGAGCACAACGTCAAAATT 2075 Query 37889 TGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGC 37948 ||||| || |||||||| ||| | || | || || || ||||||| |||||| | Sbjct 2074 TGGGACGAATGGGCGGATGAAGATGGGAACCTGGGTCCTGTTTACGGACACCAATGGAGA 2015 Query 37949 TCGTGG 37954 || ||| Sbjct 2014 TCTTGG 2009 >seq77519 Length=1156 Score = 84.2 bits (92), Expect = 6e-12 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 37651 AATGAAACAATATTTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAAAAAGAAGA 37710 ||||||| ||||||||| ||||||||||| | | || ||||| || | ||||| || Sbjct 229 AATGAAAGCATATTTAGAGCTGCTGCAAGACGTTTACGACAACGGTGTTGGTAAAGACGA 288 Query 37711 CCGAACGGGCGTCGGCACGCTGTCG-GTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAG 37769 ||| || ||| |||||| | || | || || ||||| || | || | | ||||| | Sbjct 289 CCGCACTGGCACCGGCACTC-GTAGTGTATTTGGCCGACAATTGCGTTGCGACTTAGCCG 347 Query 37770 ATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGC 37829 || || ||| | | || || ||||| | | | ||| ||| ||| |||| |||| Sbjct 348 CCGGTTTCCCGTTATTAACCACTAAAAAGGTTTTTCTGCGCGGCATTATTCATGAGCTGC 407 Query 37830 TTTGGTTTTTAAAAGGCGATACGAA 37854 |||||||| | |||||||| || Sbjct 408 TTTGGTTTGTGCGTGGCGATACTAA 432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130470667044800