Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq59922 183 2e-41 seq64137 165 6e-36 seq17866 87.8 1e-12 >seq59922 Length=6033 Score = 183 bits (202), Expect = 2e-41 Identities = 430/641 (67%), Gaps = 16/641 (2%) Strand=Plus/Minus Query 66013 AGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCA 66072 ||| || | ||| || || || | ||| || || || || ||||| | ||| || || || Sbjct 2595 AGAAGCCAAGTTACAAACTGCAACCTCATCTGGCGCAGTGTACTCTATAATCTCAGTACA 2536 Query 66073 CAGATTACTGCAGCGT--ATGGTGCCCAAATTCTGTTGATTAC-TCTTGCGATTGCATGC 66129 | || || || | || || || || || ||||| || | ||| | ||||| || Sbjct 2535 TAAGTT--TGAAGACTTAATTGTACCTAAGTTTTGTTGGTTTGATTTTGAGTTTGCA-GC 2479 Query 66130 ATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCA 66189 ||| ||||||| |||||| ||||| || ||||||| ||| || || | ||| | ||| Sbjct 2478 ATCTTTGTACAACATGTAAGGAGTACCTGTCTCAATTTGAGATTCTAAGATTTTGAACCA 2419 Query 66190 AAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTT--CGTAATGTTCGTAG 66247 ||| | |||| || | || | | ||| | ||| || |||| | ||| Sbjct 2418 AAGGTCTTGTGCTTTGATTGTTTTT--CTTCCTTTCCCTGCTTTTTCGTACTTCGTGTAC 2361 Query 66248 AGGTGTTCGAAGGATTCACCCCAT---ACTTCGGACAGACATGGACACTTGTGTGGACAC 66304 | |||||| |||| | | || || || |||| ||| || | ||| |||||| Sbjct 2360 AACGCTTCGAA---TTCAGCACTGTGCACATCTGAAAGACCTGGGCATTCGTGCGGACAC 2304 Query 66305 ATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGG 66364 || | | ||| || |||| | || ||||| |||| |||| ||| || | ||| | Sbjct 2303 ATTAAAGTCCACTCTCCATTTTCTTTCACACGTTGCATGAATAAATCTGGAACCCACAAA 2244 Query 66365 GCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGG 66424 ||||| || | ||| | ||||| |||||| || | ||||||||||| |||||| | | Sbjct 2243 GCGTAAAATAAATCTCTTGCTCTTTGCTCTTCTTTACCGTGATTTTTCTTCAAGTCTAAG 2184 Query 66425 AACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTG 66484 || ||||| | || |||||||| || |||| ||| || ||||| || || ||||||| Sbjct 2183 AAGTCAAATACATCAGCATGCCAAGGCTCCAAGTACATTGCGAAAGAACCTTTACGTTTT 2124 Query 66485 CCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGC 66544 || |||||||| || ||||| | ||| || ||| || || | ||||| || |||| Sbjct 2123 CCTCCACCTTGATCTACGTATCTAGCAGTATCGTTAAATACTCTTAACATTGGAACGATA 2064 Query 66545 CCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACA 66604 |||||||| || || || || | |||| || ||| || || || | ||| | | Sbjct 2063 CCGTTAGAAGCACCGTTTGTTCCTTTGATGTATGAACCTGTCGCACGGATGTTGTGCATA 2004 Query 66605 TTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645 || ||||| ||||| || | | ||||| |||||| Sbjct 2003 GCCAATCCAATTCCACCAGCTGATTGAGAGATCTGAGCACA 1963 Score = 114 bits (126), Expect = 1e-20 Identities = 552/862 (64%), Gaps = 23/862 (3%) Strand=Plus/Plus Query 61081 GAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTC 61140 || || |||||| | ||||||||||| |||||| |||||||| | || ||| | Sbjct 297 GATGACATTTGGGCTTTCTACAAAAAGGCCGAAGCTAGTTTCTGGACAGCCGAAGAGATT 356 Query 61141 GATTTGTCCAAA-GACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATT 61195 ||| | || | ||| | | ||| ||||| | | | ||| ||||| |||| Sbjct 357 GATCT-TCAAGCCGACTTAATTGATTGGGATACGAAGCTGAACGATAA-TGAACGTCATT 414 Query 61196 TCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTAT 61255 | |||||||||| ||||| || || || || || || || || || ||||| || ||| Sbjct 415 TTGTTAAACATGTATTGGCTTTTTTCGCGGCATCAGATGGAATTGTAAATGAAAACTTAG 474 Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGT-CGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 || |||| | || || || || | | ||||| | ||||||||| ||||| Sbjct 475 CAGAGAATTTCTTGTCAGAAGTTCA-GTATACTGAGGCAAAATTTTTCTACGGGTTCCAA 533 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGG 61374 | || | || || | ||||| || | ||| || | || ||||| ||||| | Sbjct 534 GTAGCAGTTGAAAACATTCACTCTGAAACGTATTCGCTTTTAATAGATACTTACATTAAA 593 Query 61375 GAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGG 61434 || | ||| ||| ||||| ||||| || || || || || ||| Sbjct 594 GACACGAAGGACAAAGAATATTTGTTTAATGCTATTGACACAATGGAATGTGTTAAGGTA 653 Query 61435 AAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTG 61494 ||||| |||||||| || |||||| | | || | |||||| ||| || | Sbjct 654 AAAGCAGATTGGGCTTTGCGTTGGATTG-----ATGAAGGAT-CATTTGCAGAAAGACTT 707 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 | |||||||| | || || || | || ||| || || || |||| | ||| Sbjct 708 GTTGCATTTGCAGCAGTGGAAGGAATTTTCTTCTCAGGTTCTTTCTGTTCAATTTACTGG 767 Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGAC 61614 ||||||||| | ||||| ||||| || || | ||| || ||||| || ||| | ||| Sbjct 768 TTGAAGAAAAGAGGACTGATGCCAGGGCTTTCTTTCTCTAACGAGTTAATCTCAAGAGAC 827 Query 61615 GAGGGCATGCATTGTGATTTTGC-TGTTT-TGCTATTCAAACGCTATC-TGGTGAATCGT 61671 || || |||| |||||||| || ||||| | || | ||| ||| | | || | | Sbjct 828 GAAGGATTGCACTGTGATTTCGCATGTTTATTATACACCAACCACATCGTTGATAAACTT 887 Query 61672 CCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTT 61731 | | |||| || | ||| | | ||| || || || || | |||||| Sbjct 888 C---CAAAGGAAACAGTTCAGAAAATTATCCTTGACGCAGTTGAAATTGAGAAAGAATTT 944 Query 61732 CTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTAT 61791 | ||| || | ||||| | ||||| ||||| ||| | |||||||| || Sbjct 945 ATTCTTGAAGCACTTCCCGTTAAGTTAATCGGAATGAACAGTGATTTGATGTCGCAATAC 1004 Query 61792 ATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATAC 61850 ||||| |||||||| || | | ||| | | ||| || | ||| | | | || | Sbjct 1005 ATTGAGTTTGTTGCTGATAGATTATTGTTGGAATTAGGAAACGAAAAAG-TATTCAACGC 1063 Query 61851 GAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGA 61910 || ||||||||||||||||||||| |||||||| | | || || ||||| || || || Sbjct 1064 GACAAACCCATTTGATTTCATGGAAATGATTTCAATTCAAGGGAAAACGAACTTCTTTGA 1123 Query 61911 GAAACGTGTAGGCGACTATCAA 61932 || | || || || || ||| Sbjct 1124 AAAGAGAGTTGGTGAATACCAA 1145 >seq64137 Length=2701 Score = 165 bits (182), Expect = 6e-36 Identities = 447/679 (66%), Gaps = 4/679 (1%) Strand=Plus/Minus Query 66089 ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATT-GCATGCATCCTTGTACATCATGTA 66147 || || || | |||||| || ||| || | ||| ||||| |||||| |||| |||||| Sbjct 1431 ATAGTTCCAAGATTCTGCTGGTTAGATTTTCCATTAGCATG-ATCCTTATACAGCATGTA 1373 Query 66148 CGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC 66207 || || ||||| | || ||||||| |||||| | ||| ||| ||||||| || Sbjct 1372 TGGGACTCCAGTCTCTATCTGTGACTCAAGGATGGCATTCCATAGATGTTGTGCCTTGAC 1313 Query 66208 CGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCAC 66266 || | | | || | | || || || || | || ||||| | ||| || || | Sbjct 1312 AGT-CTTTCTTCCTTTTCCTTCAGTCTCATATTTCTCATAGAGTTCTTCAAATTCTTTTC 1254 Query 66267 CCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCT 66326 |||| |||| ||| || || | | |||||| | || | ||| || |||| Sbjct 1253 CCCAAGTTTCGAACAATTGGGGGCATTCATTTGGACAGAAGAGTGTCCAGTCTTCATCAG 1194 Query 66327 GTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTC 66386 |||||| | | ||| |||| |||| | ||| | ||||||||||| || | ||||| Sbjct 1193 CTTCTACTCTCCTCATGAATATATCACTAACCCACAAAGCGTAGAAGAGGTCTCTTGCTC 1134 Query 66387 GTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCC 66446 || || || | || || || || | ||||| ||||| ||| | || || | ||||| Sbjct 1133 TCTGTTCATCTTTACCATGGTTCTTCCTCAAGTTAAGGAAGTCATAAATATCTGGATGCC 1074 Query 66447 ATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGC 66506 ||||||| |||||||| ||||| | ||| | | || ||||| |||||||| || || | Sbjct 1073 ATGGTTCGAGGTAGATAGCGAAAGCTCCCTTTCTCTTACCGCCTCCTTGGTCAACATATC 1014 Query 66507 GAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGC 66566 || | |||||||| | | ||| || || || || || || | || || || | Sbjct 1013 TTGCAGTGTCATTGAAGACCCTAAGCATTGGGACAAGTCCATTTGAGTGACCGTTTGTTC 954 Query 66567 CGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCG 66626 | |||| ||| || | ||| ||||||| || ||||| || || || Sbjct 953 CTCTGATGTAGGAAGAAGTTGATCTAATACAGTGAACAGCCAATCCAATTCCTCCAGCAT 894 Query 66627 TCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCT 66686 |||| ||||| |||||| | | ||| ||| || || ||||| || ||| || Sbjct 893 TCTTAGAGATAATAGCACATTGTTGTAATGTTTCGAAAATTCCTTCAATTGAATCATCCC 834 Query 66687 TGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGG 66746 || | | | |||||||||| | ||| ||||| || || | || ||||||| Sbjct 833 GCATTGCTAATAAAAAGCATGAACTCATTTGTGGTTTTGGGGTACCAGCATTAAAGAGGG 774 Query 66747 TGGGTGTAGCGTGCGTAAA 66765 | ||||| ||||| || || Sbjct 773 TTGGTGTGGCGTGTGTGAA 755 >seq17866 Length=285 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 65995 AAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATA 66054 |||| | ||||| |||| || || | || || || || | ||| || || | ||||| Sbjct 48 AAACATTGGAAGTGCAATGGAAGCCAAATTACATACTGCCACCTCATCCGGGGAAGTATA 107 Query 66055 CTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACT 66114 || | ||||| || || || || |||| || || || ||||||||||| || || Sbjct 108 TTCCAATATTTCCGTACAAAGGTTGGACGAGCGAATAGTACCTAAATTCTGTTGGTTGCT 167 Query 66115 CTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTC 66174 ||| | |||| |||||||| || | ||| || || || || ||||| | ||| ||||| Sbjct 168 CTTTCTATTGGCGGCATCCTTATAAAGCATATATGGCGTACCAGTCTCTATTTGTGACTC 227 Query 66175 AATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT 66210 | || | |||||| | || |||||||| || Sbjct 228 CAAAATCTTCTCCCAAAGTTCACGGGCCTTCACAGT 263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397039119265280