Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq19780 114 2e-20 seq59718 105 1e-17 seq34388 100 4e-16 >seq19780 Length=279 Score = 114 bits (126), Expect = 2e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 196202 ACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGG 196261 || ||||||||||| || || || |||||||| |||| ||||||||||||| ||| Sbjct 272 ACAACGAAGAAACTGCACCTTCGCTCCATCATCATTGAATTGCTGTGGTTCCTGCGCGGC 213 Query 196262 GACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAAC 196321 || ||||||||||||| |||||||| ||| || | |||||||| || ||||| | Sbjct 212 GATACCAACATCAAGTGGCTGAATGAGAACAAGGTGACGATCTGGAATGAATGGGCAGAT 153 Query 196322 GAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 || |||| | || || ||||| || ||| | |||||||| Sbjct 152 GAGAACGGTGATCTCGGCCCGGTCTATGGTCACCAGTGGCG 112 >seq59718 Length=6799 Score = 105 bits (116), Expect = 1e-17 Identities = 196/285 (69%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 196067 ATGCATCAGTATCACGAACTCTTACAGCAGGTGCTCAGTATCGGCCACGA-CAAAGCTGA 196125 ||| | || |||||||| | |||||||| | || | ||| |||| ||||| || Sbjct 2311 ATGAAGCAATATCACGACTTATTACAGCACATTCTGGACAACGGA-ACGAACAAAGAAGA 2253 Query 196126 CCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAGA 196185 || || || ||||| ||||| || | | ||| || ||||| || ||| || | || Sbjct 2252 TCGCACAGGAACAGGTACTACATCGGTTTTTGGCTACCAAATGCGTTTTGATTTGAACGA 2193 Query 196186 CGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGCT 196245 || || ||| |||| ||||| || | || | | || || ||||| ||||| | Sbjct 2192 AGGTTTTCCGTGTATCACAACGAAAAAGTTGCACTTAAGATCGATTATTCACGAACTCTT 2133 Query 196246 GTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCTG 196305 |||||| | | || ||||||||||||||||| || || || || ||| || || Sbjct 2132 ATGGTTCTTGCAAGGCGACACCAACATCAAGTATCTAAAAGAGCACAACGTCAAAATTTG 2073 Query 196306 GAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGG 196350 | |||| |||||| | ||| || |||||||| || |||||||| Sbjct 2072 GGACGAATGGGCGGATGAAGATGGGAACCTGGGTCCTGTTTACGG 2028 >seq34388 Length=241 Score = 100 bits (110), Expect = 4e-16 Identities = 137/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 196779 TGTCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCG 196838 |||| || ||| |||||||||| || ||||| ||||| ||||| || ||||| |||| Sbjct 52 TGTCGTGCCAGTTGTATCAGCGCTCGGCAGATATCTTCCTGGGTGTTCCCTTCAATATCG 111 Query 196839 CGTCTTACGCATTGCTGATTCACATGGTGGCGCA----ACAGGTTAACATGGTACCGGGC 196894 | || ||||||||||||| ||||||||||| || ||||| || || | ||| Sbjct 112 CTTCCTACGCATTGCTGACACACATGGTGGCCCATGTCACAGG-CCTCAAGG---CCGGC 167 Query 196895 GAGTTCGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAA 196954 |||||| | || ||||| | ||||||||| || || ||| | ||||||| || Sbjct 168 GAGTTCATCCACACGCTGGGTGATGCCCACATCTATTCAAACCACCTTGAACAGGCCGAT 227 Query 196955 GAACAGCTG 196963 || || ||| Sbjct 228 GAGCAACTG 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770489707549440