Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq98262 93.3 1e-14 seq65442 86.0 2e-12 >seq98262 Length=464 Score = 93.3 bits (102), Expect = 1e-14 Identities = 207/307 (67%), Gaps = 8/307 (3%) Strand=Plus/Minus Query 33606 CATTTGCTGGATAACAATTTCTGTGGTGTATTTTTCAACTCCAGCATTATCAGTCCATTT 33665 |||||| | | |||||||||||| | || || ||| | || || |||||| Sbjct 403 CATTTGGTCGCCAACAATTTCTGTTGAATAGCGGGTTACGCCATCTTTTTC---CCATTT 347 Query 33666 TCTAGTGCGCAACTGACCTTCAAAATAAACTTGTGAG-CCTTTCCTAAGATACTCACCAG 33724 | || |||| | ||||| | ||||| | | | ||||| | ||||||||||| | Sbjct 346 ACGTGTTTGCAAACGGCCTTCTACATAAA-TCGCGCTACCTTTTTTCAGATACTCACCTG 288 Query 33725 CAATTTCAGCGAGCTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCT 33784 ||||||| || | || | | || || | ||||||||| |||| || | || Sbjct 287 CAATTTCTGCTAAACGGCGATACATCACAATATTGTGCCATTCGGTTTTTTCTTGCTTAA 228 Query 33785 CACCAGTAGCCTTATCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGC 33844 | || | ||||| ||||| ||| |||||||||| | | || ||| |||| Sbjct 227 CGCCGCTT---TTATCTTTCCAGTTTTCTGATGTAGCAATACTAAAATTACAAACTGCGC 171 Query 33845 CGCCATTTGGCATGTATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTACTT 33904 |||||| ||||||||| |||||||||||||| | ||||| |||| | | || |||| Sbjct 170 CGCCATCTGGCATGTAGCGCACTTCTGGGTCACGTCCTAAGTTGCCTACTAATATCACTT 111 Query 33905 TATTTAC 33911 |||| || Sbjct 110 TATTGAC 104 >seq65442 Length=2413 Score = 86.0 bits (94), Expect = 2e-12 Identities = 181/259 (70%), Gaps = 12/259 (5%) Strand=Plus/Plus Query 33583 CCAATCATTTGCATCACACCACCCATTTGCTGGATAACAATTTCTGTGGTGTATTTTTCA 33642 |||| ||| |||| |||||| | |||| | |||||||||||| |||||||| || Sbjct 76 CCAA-CATCTGCAGTTCACCACGGAAACGCTGCAAAACAATTTCTGTTGTGTATTTATC- 133 Query 33643 ACT-CCAGCATTA-TCAGTCCATTTTCTAGTGCGCAACTGA-CCTTCAAAATAAACTTGT 33699 || || | || || |||||| | || | ||||| || |||| |||||||| Sbjct 134 -CTGCCCGTTTTGGTCTTGCCATTTACGGGTTTG-AACTGCGCCCTCAAGATAAACTTTC 191 Query 33700 GAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTGC-CA---AAGATAACTAC 33755 | ||||||| | | ||| | | |||| || || | |||| || || ||||| || Sbjct 192 GCGCCTTTCTTCAAATATTGCTCGGCAACTTTTGCCAA-TTGCTCATTGAAAATAACAAC 250 Query 33756 GCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCATTCCATGATTCCGA 33815 ||||||||||| || |||| || || |||| |||||||||| ||| ||||| || Sbjct 251 ACGGTGCCATTCCGTGCGCTCTTTGCGTTCGCCAGAAGCCTTATCACGCCAAGATTCAGA 310 Query 33816 TGTAGCAACAGATACGTTG 33834 ||| || || || | |||| Sbjct 311 TGTTGCCACCGAAAGGTTG 329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144784889156096