Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq59582 149 9e-31 seq85905 100 4e-16 seq78207 98.7 1e-15 seq98063 86.0 9e-12 seq830 84.2 3e-11 >seq59582 Length=7566 Score = 149 bits (164), Expect = 9e-31 Identities = 498/766 (65%), Gaps = 33/766 (4%) Strand=Plus/Minus Query 162095 TAATGAAAGTAGCACTTATTACTGGGATCACAGGGCAAGATGGATCTTACCTAGCTGAAC 162154 |||||||| || | ||||| || ||||| || |||||||| ||||| || || || Sbjct 1507 TAATGAAAAAGGCCTTAATTACAGGTATCACCGGCCAAGATGGGTCTTATCTTGCCGAGT 1448 Query 162155 TTCTCCTTCAGAAAGGATATACAGTTCACGGTATTATCCGTCGTGCTTCTATGATT-AAC 162213 |||| | | ||||| ||| ||||| ||||||| || || ||||| | ||| || Sbjct 1447 TTCTATTAGAAAAAGGTTATGAGGTTCATGGTATTAAACGACGAGCTTCG-TCATTCAAT 1389 Query 162214 ACCCACAGAATTGACCAT----------ATCTT--TGACCGCA-TCAC--------TCTC 162252 || | |||||||| || ||| | || ||||| ||| | | Sbjct 1388 ACAGAAAGAATTGATCACTTATATCAAGATCCTCATGTCCGCAATCAAAAGTTATTTTTG 1329 Query 162253 CATTATGGAGACCTTACCGATGCTTTGAGTATCGTATCT--ATTATTAAAACAGTTCAAC 162310 ||||| || ||| | | |||| | | || | | | | || ||| || |||| | Sbjct 1328 CATTACGGTGACTTGAGCGATACCTCGA--ACCTAACCCGGATAATTCAAGAGGTTCGTC 1271 Query 162311 CAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAGCCTG 162370 | || ||| | |||||||| | || || ||||| || ||| |||||||| ||| | Sbjct 1270 CTGACGAAGTGTATAACCTTGCTGCGCAAAGTCATGTGGCGGTGTCATTTGAGGTGCCAG 1211 Query 162371 AATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGTCTTC 162430 ||||||| || | || |||||||| || || | |||| ||||| | || ||| Sbjct 1210 AATACACCGCTGATGTAGATGCATTGGGAACCCTGCGTCTGCTTGAAGCGATTCGGTTTC 1151 Query 162431 TTGGTATGGAATC-ATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTA 162489 | || | ||| | | ||| | |||| ||||| ||| ||| | || || | Sbjct 1150 TGGGGCTAGAAAAGACAACTAA-ATTCTATCAAGCTGCGACCTCTGAATTGTACGGTTTG 1092 Query 162490 GTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTT 162549 || || ||||| || || | |||||| || ||| | || || || || || |||| ||| Sbjct 1091 GTGCAAGAGACGCCGCAAAGAGAAACTACGCCATTTTACCCTCGCTCGCCATATGCGGTT 1032 Query 162550 GCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCC 162609 ||||||||||||| | |||||| | ||| || | || ||| | ||| |||| Sbjct 1031 GCTAAACTATATGCCTACTGGATAACGGTAAATTATCGTGAGTCCTACGGCATGTTTGCC 972 Query 162610 TCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGC 162669 | || |||||| |||| ||||| || |||| | || || ||||| || || || Sbjct 971 TGTAATGGTATTTTATTTAATCATGAGTCGCCACGTCGGGGCGAAACGTTTGTAACCCGA 912 Query 162670 AAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTTGGA 162729 || || |||||||||| || ||| || | || || | | | ||||| Sbjct 911 AAAATTACCCGAGCCTTGGCCAATATTGCACACGGTTTAGAACCTGTTGTGTATCTTGGG 852 Query 162730 AACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGT--AGAGGCTATGTGGT 162787 || | | || | || || ||||| || |||||||| ||||| | || | ||| Sbjct 851 AATATGGACGCACTGCGAGATTGGGGGCATGCCAAAGATTACGTTCGCATGCAA--TGGC 794 Query 162788 TGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGG 162833 ||||| | ||||||||| | | ||||||||||| || || ||||| Sbjct 793 TGATGTTGCAGCAAGAGCAAGCTGATGATTATGTCATTGCTACTGG 748 >seq85905 Length=734 Score = 100 bits (110), Expect = 4e-16 Identities = 79/94 (84%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 18 GGGGCGTTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGGGGTCAACGGTTCGAAC 77 Query 142853 CCGTTATTCTCCACCAA---CCATTGCTCTGTAA 142883 |||||| ||||||||| || ||||| |||| Sbjct 78 CCGTTACGCTCCACCAAATTCCTTTGCTTCGTAA 111 >seq78207 Length=1114 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| |||||||||| ||| ||||| ||||||||||||||||| ||||||||||||| Sbjct 874 GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCAACGGTTCGATC 815 Query 142853 CCGTTATTCTCCACCAA 142869 ||||||| ||||||||| Sbjct 814 CCGTTATCCTCCACCAA 798 >seq98063 Length=468 Score = 86.0 bits (94), Expect = 9e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 46929 GATATGGTTTTCTGTGACCTACCTTATGGTACTACACAGAACTCTTGGGATACTATCATC 46988 ||||||||| | || ||||| |||||||| || ||||| ||| ||||||| | | || Sbjct 266 GATATGGTTCTGTGCGACCTTCCTTATGGAACAACACAAAACAAGTGGGATAGTTTGATT 325 Query 46989 CCATTCGATGAGTTGTGGGCAGAGTATCATCGTATCGTCAAG 47030 ||| |||||||||||||||| | ||| | ||||| || ||| Sbjct 326 CCACTCGATGAGTTGTGGGCGCATTATGAGCGTATTGTTAAG 367 >seq830 Length=360 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 142790 TTCGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTC 142848 || |||| |||||||||| ||| |||||||| ||| | ||| ||| || |||| |||||| Sbjct 250 TTTGGGGGATTAGCTCAGCTGGCTAGAGCGCTTGCCTGGCAGGCAAGAGGTCACCGGTTC 309 Query 142849 GAGTCCGTTATTCTCCACCAA 142869 || |||| ||||||||||||| Sbjct 310 GACTCCGGTATTCTCCACCAA 330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690515773067520