Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq116 104 4e-20 seq103 87.8 3e-15 >seq116 Length=6426 Score = 104 bits (114), Expect = 4e-20 Identities = 161/225 (72%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 5 AAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCG 64 |||||||||||||| | ||||| | || | |||||| |||||||||||||||| ||||| Sbjct 6122 AAAGGGCAGGGACGAAATCAACTCAAGATA-ATGACTTGCGCTTACTAGGAATT-CCTCG 6179 Query 65 TTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCG 124 || | ||| |||||| ||| | ||||||| | | ||| || |||| | Sbjct 6180 TTTATGACGGACAATTACAACCGACAATCCCCACCTTAACACGCTTTGAA-GATTCACAA 6238 Query 125 GACC-TGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCC 183 | | | ||| ||| |||||||| | | | |||||| | ||||| |||| Sbjct 6239 CATCGTTTCGATATTGGT-----ACTCGTTGTGCATGTTATTGTAGCACACGTGCAGCCC 6293 Query 184 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 || ||||||||||||||||||||||||||||||| | ||||| Sbjct 6294 AGGTTATCTAAGGGCATCACAGACCTGTTATTGCCTTGATCTTCC 6338 >seq103 Length=6744 Score = 87.8 bits (96), Expect = 3e-15 Identities = 78/95 (82%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | |||| || |||||||| |||| ||||| ||| Sbjct 4287 GTACAAAGGGCAGGGACGTATTCATCTCGAG-TTAATGACTCGATATTACAAGGAA-TTC 4344 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC 95 |||||| || || || |||| |||| || |||||| Sbjct 4345 CTCGTTCAAAACAAATAATTCCAATCATTTATCCC 4379 Score = 78.8 bits (86), Expect = 1e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 || |||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 4504 CATTGTAGCGCGCGTGCGGCCCAAGATGTCTAAGGGCATCACAGACCTGTTATTGC 4559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751996583335