Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq103 141 1e-31 seq116 82.4 1e-13 >seq103 Length=6744 Score = 141 bits (156), Expect = 1e-31 Identities = 105/123 (85%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| ||| ||||| ||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 4711 CTAATTAATAGGTTTCAGTCTCGTTCGTTACCGGAATTAACCTGACAAATCACTCCACCA 4770 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTC 261 |||||||||||||||||||||| ||||| ||||| |||||| || | |||||||| | Sbjct 4771 ACTAAGAACGGCCATGCACCACTACCCAATAAATCATGAAAGAACTCTTAATCTGTCATT 4830 Query 262 CCT 264 ||| Sbjct 4831 CCT 4833 Score = 78.8 bits (86), Expect = 1e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || |||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 4504 CATTGTAGCGCGCGTGCGGCCCAAGATGTCTAAGGGCATCACAGACCTGTTATTGC 4559 >seq116 Length=6426 Score = 82.4 bits (90), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 4/96 (4%) Strand=Plus/Plus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79 |||||| | ||||| |||||| ||||||||||||||||||||||||||||||| | | Sbjct 6275 TGTAGCACACGTGCAGCCCAGGTTATCTAAGGGCATCACAGACCTGTTATTGCCTTGATC 6334 Query 80 TT-CCATTGGCTGGAAGCCAAT-AGTCCCTCTAAGA 113 || ||| || ||||| || | ||||||| ||||| Sbjct 6335 TTCCCAATGTTTGGAA--CATTGAGTCCCTTTAAGA 6368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796796379789