Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq9 208 6e-49 seq23 145 6e-30 >seq9 Length=285593 Score = 208 bits (230), Expect = 6e-49 Identities = 516/767 (67%), Gaps = 36/767 (5%) Strand=Plus/Minus Query 65813 TCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCG-- 65870 ||||||| |||||||| || || || ||||| | || |||| ||||| |||| Sbjct 71388 TCGGCCAAACCTTGAATACCGATGCCAATGGGTCTGTGGCGCATGTTGGACTTCCTCGTG 71329 Query 65871 -CCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACA 65929 ||||| |||||||| | ||| | || || | ||||| || | || || ||| Sbjct 71328 GCCTCA---ACAGGGTAATGATTTCTGTCAATCACCTTGTTCAAGTTTCTCGTAACTACA 71272 Query 65930 TGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGAC 65989 || || ||||| || || |||| | ||||| ||||||| | | || Sbjct 71271 TGGGTGACACGTCTCAGTTTTTCGTAGTCAAA----------CGATCGGCTAT-CAAGAT 71223 Query 65990 ACCACAAACTTGGG-AAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGC 66048 | |||||||| || |||| ||| || ||||||||||| ||||||||||| ||||| || Sbjct 71222 -CGACAAACTTTGGCAAGGACAAC-GAAGCGAGGTTGCATACAGCTATCTCATCAGGTGC 71165 Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| ||||| ||||| || | | || || |||||||| | || Sbjct 71164 GGTATACTCCACTATTTCAGTGCAGAGATTGCTTGATTGAATAGTACCCAAATTTTTCTG 71105 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || || || | ||||| || |||||||| | | | | || || || || |||| ||| Sbjct 71104 GTTGCTTTTTCTGTTGCACGCGTCCTTGTAAACTAGGAATGGCGTTCCAGTTTCAATTTG 71045 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCA-CCGT---ACGTACCGCCCTAC 66224 ||| | | |||||| ||| | | ||||||| | | || || || || || Sbjct 71044 GGATTGTAGAATGGCGAACCATAACGATTGTGCCTTGATCTGTTTGACATAACG----AC 70989 Query 66225 CTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCG-GAC-AG 66282 ||| || || | | ||| || | ||| || || ||||| | | | || Sbjct 70988 CTTGATTCTCATACTTTATGTACAGCTCTTCAAACTCTT--TTCCATAAGAGGTGTCAAG 70931 Query 66283 ACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCAT 66342 | ||||| ||| |||||||| | |||| ||||||| || ||| | ||| Sbjct 70930 TCCAGGACATAAGTGAGGACACATTAAACTCCAAGCACCATCAGATTGTACTCTTTCCAT 70871 Query 66343 AAATAGATCAGGTATCCAGAGGGCGTAG-AAGAGATCGCGTGCTCGTTGCTCCTCAATGC 66401 ||||| || | |||||| || || ||| || | || | ||||| || || || | | Sbjct 70870 GAATAGGTCGGATATCCATAGAGC-TAGAAATAAGTCTCTTGCTCTCTGTTCTTCTTTAC 70812 Query 66402 CGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGA 66461 | || || || || | || | || || || | || ||||||||||| |||| ||||| Sbjct 70811 CATGGTTCTTCCGGAGTTCAATAAAGTCGAACACATCAGCATGCCATGGCTCCAAGTAGA 70752 Query 66462 TGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACA-TTGTTG 66520 | ||||| |||||| | |||||||| || |||||||| || |||||||| ||| | ||| Sbjct 70751 TTGCGAATGAGCCCTTGCGTTTGCCACCTCCTTGGTCTACATAGCGAGC-ACAGTCATTG 70693 Query 66521 AAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 || || | | ||| || | || ||||| | | | |||||||| || Sbjct 70692 AAAACTCTGAGCATTGGAATGATTCCGTTCGCTCTTCCATTGGTTCC 70646 >seq23 Length=179919 Score = 145 bits (160), Expect = 6e-30 Identities = 315/464 (68%), Gaps = 8/464 (2%) Strand=Plus/Minus Query 61161 TGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTT 61220 ||| |||||| |||| | || ||| | |||||| || | | ||| |||| ||||| Sbjct 162000 TGATTGGGAGGGTTTGAAGGACGATGAGCGACATTTTATAAGTTACGTGCTGGCATTCTT 161941 Query 61221 TGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCA 61280 ||| ||| || || || || |||||||| | || ||| || || | || Sbjct 161940 TGCTGCTAGTGATGGAATAGTTCTGGAGAATTTGGCAGGCCGCTTCTTGCGTGAAATTCA 161881 Query 61281 AGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGA 61340 | |||| | ||| | ||||| |||||| ||||| ||||| || |||||| || Sbjct 161880 CATACCGGAAGTGCGCTCGTTCTATTCCTTCCAAATTGCAATGGAAAACGTCCACAGCGA 161821 Query 61341 GATGTACAGTGTTCTCATCGATACGTACATCA--GGGAGCG-GGCGGAACGTGAAC-GAT 61396 || || | | || ||| ||| | | |||| || ||||||| || | || Sbjct 161820 GACTTATTCGTTATTGATAGATGTGTATTTAAAGGGGAACGAGGCGGAAAA-GAGCAGAC 161762 Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 ||||||| |||||| ||| | ||| ||||||||||| ||||| ||||| |||| | Sbjct 161761 TGTTCAACGCCATCCAGAGCGTGGAGGCCGTGAAGCGGAAGGCGGAGTGGGCAGTCAAGT 161702 Query 61457 GGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 |||| | | |||| | || |||| |||||| | || | |||| | ||||| | Sbjct 161701 GGATGA--ATCACAAGAAC-ACTTTTGCCGAACGACTACTAGGATTTTGCGCAGTCGAAG 161645 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | | || || ||| || ||| ||| ||||| ||||| |||||||||||||| ||| Sbjct 161644 GCATCTTATTTTCTGGCTCTTTTTGCGCCATCTTCTGGTTCAAGAAACGTGGACTCTTGC 161585 Query 61577 CCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 |||| || ||||||||||| || | || ||| | ||||||||| Sbjct 161584 CCGGCCTCACCTTCAGCAACGAACTCATTTCAAGGGACGAGGGC 161541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565727526160