Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq99 141 2e-31 seq5402 134 3e-29 seq38 82.4 2e-13 seq1 77.0 8e-12 >seq99 Length=10982 Score = 141 bits (156), Expect = 2e-31 Identities = 201/279 (72%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| |||||| ||| ||||||||||||||| | |||||||| Sbjct 7544 TAAACTGTATCTGCACAGCTATTCCAATTTCACTGAGTCAATCATAGAGACAGCTGTTGT 7603 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||||| |||||| |||| | | | | ||| | | ||||| ||||||||||||||||| Sbjct 7604 ATCGTTACACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGA 7663 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGT----TAGC 182 || | | |||| ||||||| || ||||||| ||| |||| | | || || Sbjct 7664 CCCTCA-CGTTAAGGCCGCCTTTAACCGGGGTTTCCGTCAACATCAAATAGTATTATATT 7722 Query 183 TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA-CTTT 241 ||| || |||||| |||||||||||||| |||||| ||||| | | ||| Sbjct 7723 TAATTATCTCTGTTAACCAGCCGGCACCGGGCAGATATCACACTTTATACATAGATTTTT 7782 Query 242 CGTGTTT--GCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | ||| ||| ||||||||||||| | |||||||||| Sbjct 7783 AATCTTTCAGCAAAGTGCTGTGTTTTAATTAAACAGTCG 7821 >seq5402 Length=234 Score = 134 bits (148), Expect = 3e-29 Identities = 129/165 (78%), Gaps = 13/165 (8%) Strand=Plus/Minus Query 119 CCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGT 178 ||||||||||||||| ||||||||||||||||||| ||||||| | |||||| || Sbjct 234 CCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCTGGGCTTCATTTCGGAGCTT-GC-- 178 Query 179 TAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCAC 238 ||||| || ||||||||| |||||||||||||||||| ||||||||||| | Sbjct 177 ------ACCCCTCCACTTAACCTTCAGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTC 124 Query 239 TT----TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 || || || |||||| |||||||||| ||||||||||| Sbjct 123 TTGAAGCCGACTTAGCAGAGCCCTGTGTTTTTGCTAAACAGTCGC 79 >seq38 Length=400214 Score = 82.4 bits (90), Expect = 2e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 79 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTA 138 ||||||||||||||| || || ||||| ||||||||||||| |||||| ||||| ||| Sbjct 351561 TTCGTGCAGGTCGGAGCTCACTCGACACTGAATTTCGCTACCGTAGGACTGTTATAGTTG 351502 Query 139 CGGCCGCCGT 148 | |||||||| Sbjct 351501 CAGCCGCCGT 351492 >seq1 Length=4641914 Score = 77.0 bits (84), Expect = 8e-12 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 89 TCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGT 148 ||||||||| |||||||| | || ||||||||||||||| ||||| ||||| || |||| Sbjct 4260845 TCGGAACTTTCCCGACAATGCATGTCGCTACCTTAGGACAGTTATAGTTACATCCACCGT 4260904 Query 149 TTACCGGGGCTT 160 |||| | |||| Sbjct 4260905 TTACTAGAGCTT 4260916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260612632512