Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq5402 154 3e-35 seq1 87.8 4e-15 seq99 84.2 5e-14 seq38 84.2 5e-14 >seq5402 Length=234 Score = 154 bits (170), Expect = 3e-35 Identities = 134/166 (81%), Gaps = 13/166 (8%) Strand=Plus/Minus Query 113 CCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATT 172 |||||||||||||||||||||||||||||||||| |||||| | ||| || || Sbjct 234 CCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCTGGGCTTCATTTCGGAGC-----TT 180 Query 173 GCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTC 232 || || ||| |||||||||| |||||||||||||||||| ||||||| ||||| Sbjct 179 GC----ACCCCTCCACTTAACCTTCAGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTC 124 Query 233 TTG----CGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCT 274 ||| |||||||||||| |||||||||||| |||||||||||| Sbjct 123 TTGAAGCCGACTTAGCAGAGCCCTGTGTTTTTGCTAAACAGTCGCT 78 >seq1 Length=4641914 Score = 87.8 bits (96), Expect = 4e-15 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 83 TCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGT 142 ||||||||| |||||||| | || ||||||||||||||| ||||||||||| || |||| Sbjct 4260845 TCGGAACTTTCCCGACAATGCATGTCGCTACCTTAGGACAGTTATAGTTACATCCACCGT 4260904 Query 143 TTACTGGGGCTTA 155 ||||| | ||||| Sbjct 4260905 TTACTAGAGCTTA 4260917 >seq99 Length=10982 Score = 84.2 bits (92), Expect = 5e-14 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||| ||| | ||| ||||||||| ||||| || | ||||||| |||||||| Sbjct 7552 ATCTGCACAGCTATTCCAATTTCACTGAGTCAATCATAGAGACAGCTGTTGTATCGTTAC 7611 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 || ||| ||| | | | | ||| | | ||||| ||||||||||||||||||| | | Sbjct 7612 ACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGACCCTCA-C 7670 Query 129 GTTACGGCCGCCGTTTACTGGGGCTT 154 |||| ||||||| || || |||| || Sbjct 7671 GTTAAGGCCGCCTTTAACCGGGGTTT 7696 >seq38 Length=400214 Score = 84.2 bits (92), Expect = 5e-14 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 72 TTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTT 131 |||||||| ||||||| || || ||||| ||||||||||||| |||||| ||||||||| Sbjct 351562 TTTCGTGCAGGTCGGAGCTCACTCGACACTGAATTTCGCTACCGTAGGACTGTTATAGTT 351503 Query 132 ACGGCCGCCGT 142 | |||||||| Sbjct 351502 GCAGCCGCCGT 351492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062242116736