Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq71 111 5e-22 seq5 93.3 1e-16 seq3 84.2 7e-14 seq2 82.4 2e-13 >seq71 Length=26611 Score = 111 bits (122), Expect = 5e-22 Identities = 144/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 ||||| | | ||| |||||||| || | || | ||||||| | |||||| ||| | | Sbjct 1434 GGGACTAAGACAAGTCATCATGGCCTTAATATTGTGGGCTATAGACGTGCCACATATGCC 1375 Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGT-TCTCAGTTC 414 | |||||| | |||||| | || || ||| |||| |||||| | | | | | || Sbjct 1374 TAAACAAAGAGATGCGAAAATGTGAATTCTAGCTAATCTCATAAAATAGGATATAAATTT 1315 Query 415 ---GGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCA 471 ||||||||||||| || ||||||||||||| || ||| ||||||||||| |||| Sbjct 1314 TAAGGATTGTAGTCTGAAATTCGACTATATGAATATGTAATTACTAGTAATCGTGAATCA 1255 Query 472 GCATGCTACGGTGAATA 488 |||| |||||||||| Sbjct 1254 CCATGTCACGGTGAATA 1238 >seq5 Length=2401786 Score = 93.3 bits (102), Expect = 1e-16 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 ||||||| |||||||||||||||||||||||| | || |||||||||||||||||| || Sbjct 1501403 CGCAAGGGTGAAACTCAAAGGAATTGACGGGGGCTCGTACAAGCGGTGGAGCATGTAATT 1501462 Query 67 TAATTC 72 |||||| Sbjct 1501463 TAATTC 1501468 >seq3 Length=3704189 Score = 84.2 bits (92), Expect = 7e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 |||||| ||||| || ||||||||||||||| | || |||||||||||||||||| ||| Sbjct 672455 GCAAGGGTGAAAGTCGAAGGAATTGACGGGGGCTCGTACAAGCGGTGGAGCATGTAATTT 672396 Query 68 AATTCG 73 |||||| Sbjct 672395 AATTCG 672390 >seq2 Length=4461408 Score = 82.4 bits (90), Expect = 2e-13 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 ||||||| ||| ||||||||||||||||||| | || | ||||||||||||| || || Sbjct 412004 CGCAAGGGCGAACCTCAAAGGAATTGACGGGGGCTCGTAGAAGCGGTGGAGCAAGTAATT 412063 Query 67 TAATTCGAAGCAACGCGA 84 |||||||| | | ||||| Sbjct 412064 TAATTCGATGAATCGCGA 412081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503776490560