Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq5841 174 3e-41 >seq5841 Length=606 Score = 174 bits (192), Expect = 3e-41 Identities = 169/216 (78%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 125 CGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCC 184 |||| |||||||||||||||||||||||| |||||||||||||||||| | ||| | | Sbjct 532 CGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCGCGAAGGTTGGC 473 Query 185 TCAGCTTGGATGGAAACCATGCGC-ACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACA 243 |||| || |||||||| | | ||||||| |||| ||| | ||||||||| | Sbjct 472 TCAGGCCGGTTGGAAACCGGCTGTTAGAGTGCAATGGCATAAGCCAGCCTGACTGCGAGA 413 Query 244 CCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACG 303 | |||||| ||||| |||||||||||| | || |||||||| ||| | ||||| | Sbjct 412 CTGACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGGTCCCTCGTGGAAGG 353 Query 304 GCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| ||||||||||| ||| | ||||||| Sbjct 352 GCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982254005536