Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq3959 289 6e-76 seq14861 87.8 4e-15 >seq3959 Length=892 Score = 289 bits (320), Expect = 6e-76 Identities = 269/336 (80%), Gaps = 19/336 (6%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || ||| ||||| | ||| |||||||||||| ||||||||||||||||||| Sbjct 365 CTTTACAACCCTAAGGCCTTCAT-CACTCACGCGGCATTG-CTGGATCAGGCTTTCGCCC 422 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 423 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 482 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| Sbjct 483 TGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCC-TTACCTCA 541 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| ||| ||| |||| ||| | || ||| Sbjct 542 CCAACTAGCTAATCAGACGCGGGCCGATCTTTCGGCGATA------AA--------TCTT 587 Query 241 TCTCCCGT-AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 || ||||| ||| | ||| |||||||||| |||||| ||| | || || | | Sbjct 588 TC-CCCGTAAGGGCTTATCCGGTATTAGCTGAAGTTTCCCTCTGTTGTTCCGAACCAAAA 646 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || | |||| | || ||||||||||||| |||||| Sbjct 647 GGTACGTTCCCACGCGTTACTCACCCGTCTGCCGCT 682 >seq14861 Length=29684 Score = 87.8 bits (96), Expect = 4e-15 Identities = 109/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 ||| |||| ||| |||| || |||||||||||||||| ||| ||||||| | | | Sbjct 29579 TCAAGCTTGCGCTTATTGCAGAAAATTCCCCACTGCTGCCCCCCTTAGGAGTTAGAGCTG 29520 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 | | ||| | | |||| ||| | ||||||| ||| ||| ||| |||||||||| Sbjct 29519 TATTTCAATCTCTATGTGGCTGTTTCCCCTCTCAAGGCAGCTACTAATCTTCGCCTTGGT 29460 Query 167 -GAGCCATTACCTCACCAACTAGCTAAT 193 | | ||||| |||||||||||||||| Sbjct 29459 AAAACTATTACTTCACCAACTAGCTAAT 29432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071840690080