Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1908 156 2e-35 seq14861 80.6 1e-12 >seq1908 Length=260 Score = 156 bits (172), Expect = 2e-35 Identities = 197/268 (74%), Gaps = 17/268 (6%) Strand=Plus/Minus Query 335 GACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGC--GACACAACGCAAACTC 392 |||||||||||||| || |||| || ||| |||| || || || ||| || || Sbjct 258 GACTCGCTTTCGCTGCGCCTACACCTATCGGCTTAAGCTTGCTTGATACATT---AAGTC 202 Query 393 GCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCG 452 ||| | |||| | ||| ||| |||| |||||| || || |||| ||| Sbjct 201 ACAGACCCATTATGCAAGAGGTACGCGGTCACCCCATA---AAGAGGC--------TCCC 153 Query 453 ACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCA-GGGGTACTTTTCA 511 || | ||||||||| |||||||||||| ||||||||||| | ||||| ||||||| Sbjct 152 ACTGCTTGTAGGCAATCCGTTTCAGGTACTGTTTCACTCCCCTCATCGGGGTGCTTTTCA 93 Query 512 CCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGT 571 |||||||||||||||||| || | ||||||||| | | ||||||||||||||| |||| Sbjct 92 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCGCATACGAGTATTTAGGCTTAGAGGGT 33 Query 572 GGTCCCGCCAGATTCACACGAAATTTCA 599 |||||| | | |||| || |||| || Sbjct 32 GGTCCCCCTATGTTCAGACAGAATTACA 5 >seq14861 Length=29684 Score = 80.6 bits (88), Expect = 1e-12 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 484 TTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGT 543 ||||||||||| || ||||| ||||||| ||||||||||||||||| || | |||||||| Sbjct 27598 TTTCACTCCCCTCCCGGGGTTCTTTTCATCTTTCCCTCACGGTACTAGTACACTATCGGT 27657 Query 544 CACCAAGGAGTATTTAG 560 || ||||||||| Sbjct 27658 TACTTTAAAGTATTTAG 27674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817329886464