Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1908 233 5e-59 seq14861 96.9 9e-18 >seq1908 Length=260 Score = 233 bits (258), Expect = 5e-59 Identities = 212/262 (81%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 146 AGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTC 204 ||||||||||| |||| ||||| | ||||| | |||||||| || | | |||||| Sbjct 259 AGACTCGCTTT-CGCTGCGCCTACACCTATCGGCTTAAGCTT-GCTTGATACATTAAGTC 202 Query 205 GCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTA 264 | |||||||||| ||| |||||||| ||||||| | |||| || ||||||||||||||| Sbjct 201 ACAGACCCATTATGCAAGAGGTACGCGGTCACCCCATAAAGAGG-CTCCCACTGCTTGTA 143 Query 265 CGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTC 324 ||| | |||||||| || ||||||||||||| |||||| |||||| |||||||||| Sbjct 142 GGCAATCCGTTTCAGGTACTGTTTCACTCCCCTCATCGGGGTGCTTTTCACCTTTCCCTC 83 Query 325 ACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCA 384 ||||||||||||||||||||||| | ||||||||| ||| |||| ||||||||| | Sbjct 82 ACGGTACTAGTTCACTATCGGTCGCATACGAGTATTTAGGCTTAGAGGGTGGTCCCCCTA 23 Query 385 TATTCAGACAAAGTTTCTCGTG 406 | |||||||| | || | |||| Sbjct 22 TGTTCAGACAGAATTACACGTG 1 >seq14861 Length=29684 Score = 96.9 bits (106), Expect = 9e-18 Identities = 77/90 (86%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 274 TTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTA 333 |||||| ||| ||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 27587 TTTCAGTCTCT-TTTCACTCCCCTC-CCGGGGTTCTTTTCATCTTTCCCTCACGGTACTA 27644 Query 334 GTTCACTATCGGTCAGTCAGTAGTATTTAG 363 || |||||||||| | | ||||||||| Sbjct 27645 GTACACTATCGGTTACTTTAAAGTATTTAG 27674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241415485824