Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq3959 232 1e-58 seq14861 82.4 2e-13 >seq3959 Length=892 Score = 232 bits (256), Expect = 1e-58 Identities = 168/193 (87%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| |||| |||||||| |||||| ||||||||||||||||||||| Sbjct 397 GGCATTGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 456 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || ||||| ||| Sbjct 457 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 516 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| || ||| ||||||||||| |||||| | |||| ||| ||||||| Sbjct 517 CGTCGCCTTGGTGAGC-CTTACCTCACCAACTAGCTAATCAGACGCGGGCCGATCTTTCG 575 Query 181 GCGATAAATCTTT 193 ||||||||||||| Sbjct 576 GCGATAAATCTTT 588 >seq14861 Length=29684 Score = 82.4 bits (90), Expect = 2e-13 Identities = 95/127 (75%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCC 93 || || ||||||||||||| ||| ||||||| | || || | ||| || | ||||||| Sbjct 29558 AAAATTCCCCACTGCTGCCCCCCTTAGGAGTTAGAGCTGTATTTCAATCTCTATGTGGCT 29499 Query 94 GTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT-GGGCTATTATCTCACCAACT 152 ||| ||||||| | ||||| ||| ||| |||||| |||||| ||||||||| Sbjct 29498 GTTTCCCCTCTCAAGGCAGCTACTAATCTTCGCCTTGGTAAAACTATTACTTCACCAACT 29439 Query 153 ACCTAAT 159 | ||||| Sbjct 29438 AGCTAAT 29432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998251627776