Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq3959 251 1e-64 >seq3959 Length=892 Score = 251 bits (278), Expect = 1e-64 Identities = 232/291 (80%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||| | | |||||| | ||||||||||||||||||| Sbjct 48 CCCACGCTTTCGCACCTCAGCGTCAATACCAGTCCAGTGAGCCGCCTTCGCCACTGGTGT 107 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || |||| ||||||||| |||||||| |||||| ||||||||| | ||||||| | | Sbjct 108 TCTTCCGAATATCTACGAATTTCACCTCTACACTCGGAATTCCACTCACCTCTCCTGGAT 167 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGG-GTTGAGCCCATAGTTTTCACATCTGAC 179 ||||| | |||| ||||| ||| | | ||| ||||||| | | |||||| |||||| Sbjct 168 TCAAGCGATGCAGTCTCAAAGGCA-GTTCTGGAGTTGAGCTCCAGGCTTTCACCTCTGAC 226 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || | |||||||| || |||||| |||| ||| |||| | |||||| || ||| | Sbjct 227 TTACAAAGCCGCCTACGTGCGCTTTACGCCCAGTAATTCCGAACAACGCTAGCTCCCTCC 286 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||||||||| ||||||||| |||||||| | |||| Sbjct 287 GTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGAGCTTATTCTCCCGGTA 337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828680681031