Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq5841 302 7e-80 seq14858 138 2e-30 seq29 123 4e-26 seq1 107 3e-21 >seq5841 Length=606 Score = 302 bits (334), Expect = 7e-80 Identities = 228/267 (85%), Gaps = 1/267 (0%) Strand=Plus/Plus Query 9 GCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCA 68 ||||| |||||||||| |||||| ||||||| |||| || ||||| ||| ||| || Sbjct 1 GCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCATACATAGCTACCCTGCTGCGCC 60 Query 69 CTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGAC 128 |||||| || || ||| |||||||||| ||| || |||||||||||||||||| || | Sbjct 61 GTTGGCACGACGACAGGTACACCAGAGGTATGTTCAACCCGGTCCTCTCGTACTAGGGTC 120 Query 129 AGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTC 188 | ||||||||||||||| ||||||||| | |||||||||| |||||||||||||||||| Sbjct 121 AACTCCTCTCAAATTTCG-ACGCCCACGGCAGATAGGGACCAAACTGTCTCGCGACGTTC 179 Query 189 TGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCA 248 |||||||||||| ||| || ||||||| ||||||||||| |||||||||||||| || || Sbjct 180 TGAACCCAGCTCACGTACCACTTTAATTGGCGAACAGCCAAACCCTTGGGACCTGCTCCA 239 Query 249 GCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||||| || |||||||||||| Sbjct 240 GCCCCAGGATGTGATGAGCCGACATCG 266 >seq14858 Length=1827956 Score = 138 bits (152), Expect = 2e-30 Identities = 93/104 (89%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224 ||||||||||||||| ||||||||||||||||| || |||||| |||||||||||||||| Sbjct 1136711 GGACCGAACTGTCTCACGACGTTCTGAACCCAGTTCACGTGCCGCTTTAATGGGCGAACA 1136652 Query 225 GCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCC 268 | |||||||||| ||| | || ||||| ||||||| |||||||| Sbjct 1136651 GACCAACCCTTGAGACATGCTACAGCCTCAGGATGTGACGAGCC 1136608 >seq29 Length=590803 Score = 123 bits (136), Expect = 4e-26 Identities = 82/91 (90%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 185 GTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTAC 244 |||||||||||||||| |||||| ||||||||||||||||| ||| |||||| ||||| | Sbjct 241778 GTTCTGAACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGACCATCCCTTGAGACCTGC 241837 Query 245 TTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | ||||| ||||||| ||||||||||||||| Sbjct 241838 TACAGCCTCAGGATGCGACGAGCCGACATCG 241868 >seq1 Length=4641914 Score = 107 bits (118), Expect = 3e-21 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 ||||||||| |||||| ||||||||||||||||| |||||||||| |||| || ||||| Sbjct 1795946 ACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGACCAACCCTTGAGACCCGCTACAGCC 1796005 Query 252 CCAGGATGAGACGAGCCGACATCG 275 ||||||| ||||||||||| ||| Sbjct 1796006 TCAGGATGCGACGAGCCGACGTCG 1796029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780687591396