Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01002011.1 Length=284 Score E Sequences producing significant alignments: (Bits) Value seq11969 159 6e-37 seq9105 78.8 2e-12 >seq11969 Length=521 Score = 159 bits (176), Expect = 6e-37 Identities = 188/253 (74%), Gaps = 1/253 (0%) Strand=Plus/Minus Query 12 GCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGG 71 ||||||||| ||| || ||||||||| || |||| | | ||||| |||| || ||| Sbjct 321 GCCGCTGGAATTCTCGTCGTTCCCGACC-ATCCTGCTGATCTCGACCATGCTGCGGCTGT 263 Query 72 CATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTG 131 | ||||| | ||||| || ||| || | || ||||||||| || ||| || || | Sbjct 262 CGCTGAACATGGCCTCGACCCGGCTGATCCTGAGCCACGGCCACGAGGGCACGGCAGCCG 203 Query 132 CCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTA 191 |||| | || ||| |||||||||| | | ||||| ||||| |||| |||| |||| | Sbjct 202 CCGGCCACGTCATCGAGGCCTTCGGCAACTTCGTGATGGGCGGCAACTTCGTGATCGGCA 143 Query 192 TCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGC 251 || | ||||||||||||||| ||||| | ||||| ||||| | |||||||| | || | Sbjct 142 TCATCGTGTTCGCGATCCTGGTGATCGTGAACTTCGTGGTCATCACCAAGGGTTCGGGCC 83 Query 252 GGATTTCCGAGGT 264 | || ||||||| Sbjct 82 GTATCGCCGAGGT 70 >seq9105 Length=270 Score = 78.8 bits (86), Expect = 2e-12 Identities = 109/153 (71%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 125 GCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTG 184 ||||||||||| | || ||| |||| ||||| | | ||||| |||| || | ||| Sbjct 256 GCCGCTGCCGGACACGTCATCGAGGCGTTCGGCAACTTCGTGATGAGCGGCAATTTCGTC 197 Query 185 GTCGGTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGC 244 |||| ||| | || ||| ||||||| | ||| | |||||||| || | |||||||| Sbjct 196 ATCGGCATCATCGTCTTCACGATCCTTGTCATCGTGAACTTTGTCGTCATCACCAAGGGT 137 Query 245 GCCGGGCGGATTTCCGAGGTGAGCGCGCGGTTT 277 | || || || |||| ||| ||||| ||| Sbjct 136 TCGGGCCGCATCGCCGAAGTGGCGGCGCGCTTT 104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 809483445177