Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq8791 129 1e-27 >seq8791 Length=667 Score = 129 bits (142), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 9/229 (4%) Strand=Plus/Minus Query 163 TGCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTG 222 |||| || |||| ||||||||| || | |||||| | || ||| |||| | | |||| | Sbjct 385 TGCGCGCGAGGTACTCGGCGCGTTCGACGTAACGGGCCAGCCAGAACAGGTTTTCAGCGG 326 Query 223 TTCTACGCAGCATAC--TCAGCC-CTC---CACCACCCAGGTGTCCTTGGTTCCACCGCC 276 | | |||||| | ||| | ||| || | ||||||||||||||| || ||||| Sbjct 325 TGCGCGACAGCATGCGTTCAACTACTCGCTCAGTATCCAGGTGTCCTTGGTGCCGCCGCC 266 Query 277 TTGCGACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGG 336 || ||| ||||| ||||||||||||||||||||||| |||||||||| || ||||| Sbjct 265 CTGGCTCGAATTGACCACCAGCGAGCCTTCCTTCAGCGCGACGCGGGTCAGCCCGCCGGG 206 Query 337 CACCA-GGCGGGTTTCCT--TGCCCGAGAGCACGAAGGGTCGCAAGTCG 382 ||| | || || | || ||| | ||||||||||| || | |||| Sbjct 205 CACGATGGTGGTGTGGCTGGAGCCGGTCAGCACGAAGGGACGAAGGTCG 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1119833556800