Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01002120.1 Length=347 Score E Sequences producing significant alignments: (Bits) Value seq14112 405 1e-110 >seq14112 Length=462 Score = 405 bits (448), Expect = 1e-110 Identities = 270/298 (91%), Gaps = 2/298 (1%) Strand=Plus/Plus Query 49 TTCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATC 108 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || Sbjct 42 TTCACCGTGGTTGCCCTCGGCATTGTTCAGGCCGAACAGGCGCTCCTTGAGGATGGTGTC 101 Query 109 GCGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGC 168 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || || Sbjct 102 GCGCTCGTTCCACAGAGCCAGGCCCAGGCACCAGCGTTGCGCCTTGTCACTGAAACCGGC 161 Query 169 C-AGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTAGG 227 | || || ||||||||||||||||||||||||||||| ||||| |||||||||||||| | Sbjct 162 CAAGCCCATCCTCGCCCCAACGGTAGGCGCGGCTGCGGGCATGTTCATGGGGGAAGTAAG 221 Query 228 CCCAGGCGTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCA 287 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 222 -CCAGGCATCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCACTTA 280 Query 288 GGTAGGGGCCCCACTCGCGCCAGCGCTCGGCGTCGCTGGTTGCCAGGCGTTGGCCTTC 345 |||| ||||||||||| ||||| |||||||| || |||||||||||| |||||||| Sbjct 281 GGTAAGGGCCCCACTCACGCCAACGCTCGGCCTCTTGGGTTGCCAGGCGCTGGCCTTC 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1007850201120