Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq3959 269 6e-70 seq14861 78.8 2e-12 >seq3959 Length=892 Score = 269 bits (298), Expect = 6e-70 Identities = 306/411 (74%), Gaps = 31/411 (8%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| ||||||||| ||| |||||||||| |||| ||||||||| ||||||| Sbjct 365 CTTTACAACCCTAAGGCCTTCATCACTCACGCGGCATTGCTGGATCAGGCTTTCGCCCAT 424 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 425 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 484 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| ||||||||||| |||| ||| ||||| | || Sbjct 485 TGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCC-TTACCTCACC 543 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| | ||| ||||| | ||| || ||||| Sbjct 544 AACTAGCTAATCAGACGCGGG-----CCGATCTT--TCGGCGATAA-------ATCTTTC 589 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | | | |||| |||||||||| |||||| ||| | || ||| ||| Sbjct 590 CCCGTAAGGGCTTATCCGGTATTAGCTGAAGTTTCCCTCTGTTGTTCCGAACCAAAAGGT 649 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | |||||| | ||||||||||||| ||| || || | | || || Sbjct 650 ACGTTCCCACGCGTTACTCACCCGTCTGCCGCT-------GACGTA---------TTGCT 693 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct 694 ACGCCCGCTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCGCTCTGAG 744 >seq14861 Length=29684 Score = 78.8 bits (86), Expect = 2e-12 Identities = 107/148 (72%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 ||| |||||||| |||| || |||||||||||||||| ||| ||||||| | | | Sbjct 29579 TCAAGCTTGCGCTTATTGCAGAAAATTCCCCACTGCTGCCCCCCTTAGGAGTTAGAGCTG 29520 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 | | ||| | | |||||||| | ||||||| |||||| ||| |||||| ||| Sbjct 29519 TATTTCAATCTCTATGTGGCTGTTTCCCCTCTCAAGGCAGCTACTAATCTTCGCCTTGGT 29460 Query 168 -GGGCCATTACCCCGCCAACTAGCTAAT 194 | ||||| | ||||||||||||| Sbjct 29459 AAAACTATTACTTCACCAACTAGCTAAT 29432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222218339136