Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq3959 401 2e-109 seq14861 105 2e-20 >seq3959 Length=892 Score = 401 bits (444), Expect = 2e-109 Identities = 300/349 (86%), Gaps = 2/349 (1%) Strand=Plus/Minus Query 152 GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAG 211 ||| | |||||||||||||||||||||||| |||||| |||| ||||||||||||||||| Sbjct 570 GATCGGCCCGCGTCTGATTAGCTAGTTGGTGAGGTAA-GGCTCACCAAGGCGACGATCAG 512 Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271 |||| | |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||| Sbjct 511 TAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACG 452 Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 ||||||||||||||||||||||| ||||||||| |||||||||| |||||| |||||||| Sbjct 451 GGAGGCAGCAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCAATGCCGCGTG 392 Query 332 AGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTG 391 || |||||||||||| |||| |||||||||| | | ||| ||||||||| |||| | Sbjct 391 AGTGATGAAGGCCTTAGGGTTGTAAAGCTCTTTTACCCGGGATGATAATGACAGTACCGG 332 Query 392 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 451 || |||| |||||||||| |||||||||||||||||||||||| |||| |||||||| Sbjct 331 GAGAATAAGCTCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGAGCTAGCGT 272 Query 452 TATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | | |||||||||| |||||||||| | |||||| || || |||||| Sbjct 271 TGTTCGGAATTACT-GGGCGTAAAGCGCACGTAGGCGGCTTTGTAAGTC 224 >seq14861 Length=29684 Score = 105 bits (116), Expect = 2e-20 Identities = 134/183 (73%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTT-ACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| |||||||||||||| | |||| | || |||||||||| ||| |||||| | | || Sbjct 29428 TCTAATTAGCTAGTTGGTGAAGTAATAGTTTTACCAAGGCGAAGATTAGTAGCTGCCTTG 29487 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 |||||| | | ||||||| | | ||| | || | | |||||||| ||| |||||||| Sbjct 29488 AGAGGGGAAACAGCCACATAGAGATTGAAATACAGCTCTAACTCCTAAGGGGGGCAGCAG 29547 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||| || |||| || |||| ||| ||| | | | ||| || ||||| Sbjct 29548 TGGGGAATTTTCTGCAATAAGCGCAAGCTTGACAGAGCGTCATCACATGAAGGAGGAAGG 29607 Query 343 CCT 345 ||| Sbjct 29608 CCT 29610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497377441664