Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq38 343 5e-92 >seq38 Length=400214 Score = 343 bits (380), Expect = 5e-92 Identities = 215/231 (93%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || ||||||||| || |||| ||||||||||||||| |||||||| ||||||||| Sbjct 292484 GAATAAGTAAAACGACATTAAGAGTAGTGGTATTTCACGAGCGCCGAA---GCTCCCACT 292428 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292427 TATGCTACACCTCCTAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 292368 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 292367 TCTTTGCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 292308 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292307 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 292257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634956992928