Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq5841 131 6e-28 seq1 80.6 9e-13 seq38 77.0 1e-11 >seq5841 Length=606 Score = 131 bits (144), Expect = 6e-28 Identities = 153/203 (75%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||||||| ||||||||||||| ||| ||| ||| || ||||| | || | | || | Sbjct 401 TCGACTTGTCAGTCTCGCAGTCAGGCTGGCTTATGCCATTGCACTCTAACAGCCGGTTTC 460 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 ||||| | ||||| |||||| | ||||||||||||| ||| ||| ||| ||||||||| Sbjct 461 CAACCGGCCTGAGCCAACCTTCGCGCGCCTCCGTTACTCTTTAGGA-GGCGACCGCCCCA 519 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAG-ATCATGGGCCAAGGTTAGATATCC 178 || ||||||||| ||| | ||||| | |||| |||||| | |||||||| || Sbjct 520 GTCAAACTACCCGCCACAGAGGGTCCCTGATCCAGTTTCATGGATCGAGGTTAGACATTA 579 Query 179 ACTACGGTCAGAGTGGTATTTCA 201 | | ||| ||||||||||| Sbjct 580 AAAAACAACAGGGTGGTATTTCA 602 >seq1 Length=4641914 Score = 80.6 bits (88), Expect = 9e-13 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 407 TCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGT 466 ||||||||| |||||||| | || |||||||||||||| ||||||||||| || |||| Sbjct 4260845 TCGGAACTTTCCCGACAATGCATGTCGCTACCTTAGGACAGTTATAGTTACATCCACCGT 4260904 Query 467 TTACTGGGGCTT 478 ||||| | |||| Sbjct 4260905 TTACTAGAGCTT 4260916 >seq38 Length=400214 Score = 77.0 bits (84), Expect = 1e-11 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 397 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTA 456 ||||||||||||||| || || ||||| ||||||||||||| ||||| ||||||||| Sbjct 351561 TTCGTGCAGGTCGGAGCTCACTCGACACTGAATTTCGCTACCGTAGGACTGTTATAGTTG 351502 Query 457 CCACCGCCGT 466 | ||||||| Sbjct 351501 CAGCCGCCGT 351492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702147006336