Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq3959 174 3e-41 >seq3959 Length=892 Score = 174 bits (192), Expect = 3e-41 Identities = 225/313 (72%), Gaps = 21/313 (7%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| |||||||| ||||| || Sbjct 297 GGCTGCTGGCACGGAGTTAGCCGGAGCTTATTCTCCCGGTACTGTCA------------- 343 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | |||| ||||||| ||||||| || || |||||||| |||||| Sbjct 344 ------TTATCATCCCGGGTAAAAGAGCTTTACAACCCTAAGG-CCTTCATCACTCACGC 396 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||||| |||| || ||| |||||| |||||||||| |||||||||||||||||| Sbjct 397 GGCATTGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 456 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 457 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 516 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| | || |||| ||| ||||| | || |||| ||||| |||| || ||| | | Sbjct 517 CGTCGCCTTGGTGAGCC-TTACCTCACCAACTAGCTAATCAGACGCGGGCCGATCTTTCG 575 Query 301 CCGATGAATCTTT 313 |||| ||||||| Sbjct 576 GCGATAAATCTTT 588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068641165632